View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9450_low_11 (Length: 349)
Name: NF9450_low_11
Description: NF9450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9450_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 133; Significance: 4e-69; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 24 - 216
Target Start/End: Complemental strand, 22045638 - 22045446
Alignment:
| Q |
24 |
aaatttgcatgttattggacgaaaaatcaatgtgagatgtctctcatatcggtctttatatcaagtgactccgttaaaactaatgacatttatgtttggc |
123 |
Q |
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| T |
22045638 |
aaatttgcgtgtcattggactaaaaaatcatgtgagatgtctctcatatcggtctttatatcaagtgactccgttaaaactaatgacatttatgtttggc |
22045539 |
T |
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| Q |
124 |
gttgacgtgtcaaggcttgttggcatatcaataatgccacatcattgagggggtaaaaggatagaattaaaagagtgaatcattattataatt |
216 |
Q |
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| T |
22045538 |
attgatgtgtccaggcttgttcgcatatcaatgatgccacatcattgaggggataaaaggatggaattaaaagagtgaatctttgttataatt |
22045446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 218 - 343
Target Start/End: Complemental strand, 22044714 - 22044589
Alignment:
| Q |
218 |
ttaccatattgccgtctaccaccaataactcactatttaccaccaacaaatcgttgtccattgtttacaattg-aaacaaaactatcattatcgctctgc |
316 |
Q |
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| T |
22044714 |
ttaccatattgccgtctaccaccaacaactcactatttaccaccaacaaatcg-tgtccattgtttacaattgaaaaaaaaactgtcattatcgttctgc |
22044616 |
T |
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| Q |
317 |
aacagtcaacatcttcctctctgcttc |
343 |
Q |
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| T |
22044615 |
aacagtcagcatcttcctctttgcttc |
22044589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 255 - 335
Target Start/End: Complemental strand, 22045350 - 22045270
Alignment:
| Q |
255 |
taccaccaacaaatcgttgtccattgtttacaattgaaacaaaactatcattatcgctctgcaacagtcaacatcttcctc |
335 |
Q |
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| T |
22045350 |
taccaccaacaaattgttgtccgtcgtttataattgaaacaaaactgtcatcatcgttctgcaaacgtcatcatcttcctc |
22045270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 335
Target Start/End: Complemental strand, 22045245 - 22045140
Alignment:
| Q |
230 |
cgtctaccaccaataactcactatttaccaccaacaaatcgttgtccattgtttacaattgaaacaaaactatcattatcgctctgcaacagtcaacatc |
329 |
Q |
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||||||||| ||| ||||||| ||||||||||| || | ||||| || |||| ||||||||| |||||||| | || | |||||||| |||| |||| |
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| T |
22045245 |
cgtctaccaacaacaactcaccgtttaccaccaataagttgttgttcaccgtttgcaattgaaatgaaactatcttcatggttctgcaaccgtcatcatc |
22045146 |
T |
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| Q |
330 |
ttcctc |
335 |
Q |
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|||||| |
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| T |
22045145 |
ttcctc |
22045140 |
T |
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