View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9450_low_14 (Length: 339)
Name: NF9450_low_14
Description: NF9450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9450_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 333
Target Start/End: Complemental strand, 8798325 - 8798010
Alignment:
| Q |
18 |
aataataggttttaccaaagcacttctagcaaagttctgaactttggttggcatagtagcagaaaataagagagtctgcctttgagctttgaaatgatca |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
8798325 |
aataataggttttaccaaagcacttctagcaaagttctgaattttggttggcatagtagcagaaaacaagagagtctgcctttgagctttgaagtgatca |
8798226 |
T |
|
| Q |
118 |
aaaacttctcttatatcatcttcaaatcccgaatctaccaatcgatcagcctcatctagcgtcaaatacctgcagttatcaagattcattttcttcttcg |
217 |
Q |
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|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| | |
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| T |
8798225 |
aaaacttctcttatatcatcttcaaatcccggatctaccaatcgatcagcctcatctaacgttaaatacctgcagttatcaagattcattttcttcttgg |
8798126 |
T |
|
| Q |
218 |
ccaacatatccttcaacctcccaggtgtggcaacaactatgtgaacccccttcttgacaatctcaagctgtgatctcatatcaattccaccaatacaaag |
317 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
8798125 |
ccaacatatccttcaacctcccaggtgtggcaacaactatgtgaacccccttcttgacaatcttaagttgtgatctcatatcaattccaccaatacaaag |
8798026 |
T |
|
| Q |
318 |
caaaggtctgtgctcc |
333 |
Q |
| |
|
|||||||||| ||||| |
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| T |
8798025 |
caaaggtctgagctcc |
8798010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 333
Target Start/End: Complemental strand, 43125902 - 43125587
Alignment:
| Q |
18 |
aataataggttttaccaaagcacttctagcaaagttctgaactttggttggcatagtagcagaaaataagagagtctgcctttgagctttgaaatgatca |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||| |
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| T |
43125902 |
aataataggttttaccaaagcacttctagcaaagttctgaattttggttggcatagtagcagaaaataggagagtttgcctttgagctttgaagtgatca |
43125803 |
T |
|
| Q |
118 |
aaaacttctcttatatcatcttcaaatcccgaatctaccaatcgatcagcctcatctagcgtcaaatacctgcagttatcaagattcattttcttcttcg |
217 |
Q |
| |
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||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||| | |
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| T |
43125802 |
aaaacttctcttatatcatcttcaaatcctaaatcgaccaatcgatcagcctcatctaacgttaaatacctgcagttatcgagattcattttcttcttgg |
43125703 |
T |
|
| Q |
218 |
ccaacatatccttcaacctcccaggtgtggcaacaactatgtgaacccccttcttgacaatctcaagctgtgatctcatatcaattccaccaatacaaag |
317 |
Q |
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|||||||||||||||||||||| || || ||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
43125702 |
ccaacatatccttcaacctcccgggagttgcaacaactatatgaacacccttcttgacaatctcaagctgcgatctcatatcaattccaccgatacaaag |
43125603 |
T |
|
| Q |
318 |
caaaggtctgtgctcc |
333 |
Q |
| |
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|||||| ||| ||||| |
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|
| T |
43125602 |
caaaggcctgagctcc |
43125587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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