View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9450_low_17 (Length: 334)
Name: NF9450_low_17
Description: NF9450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9450_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 3e-79; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 158 - 319
Target Start/End: Original strand, 24757429 - 24757590
Alignment:
| Q |
158 |
aaaaccctaacaaaagtgtaaaactacttaaatgttgtctagaacagaaatttgttgcaccggaagttgttccttatatcgcactgcaaaatttgatgga |
257 |
Q |
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| T |
24757429 |
aaaaccctaacaaaagtgtaaaactacttaaatgttgtctagaacagaaatttgttgcaccgcaagttgttccttatatcgcactgcaaaatttgatgga |
24757528 |
T |
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| Q |
258 |
atgttgtgtggtgaaatctactagctcatattgtgagttgtcccaccggactacaagataag |
319 |
Q |
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| T |
24757529 |
atgttgtgtggtgaaatctactagctcatattgtgagttgtcccaccggaatacaggataag |
24757590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 169 - 307
Target Start/End: Original strand, 16649740 - 16649878
Alignment:
| Q |
169 |
aaaagtgtaaaactacttaaatgttgtctagaacagaaatttgttgcaccggaagttgttccttatatcgcactgcaaaatttgatggaatgttgtgtgg |
268 |
Q |
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| T |
16649740 |
aaaagtgtaaaactatttatattttgtctaaaacataattttgtcacaccgtaagttgttccgtatatcacactgcaaaatttgaaggaatgttgtgagg |
16649839 |
T |
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| Q |
269 |
tgaaatctactagctcatattgtgagttgtcccaccgga |
307 |
Q |
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| T |
16649840 |
tgaaatctactaactcttatcatgagttgtctcaccgga |
16649878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 11 - 83
Target Start/End: Original strand, 24757282 - 24757354
Alignment:
| Q |
11 |
cataggaattgaaataaaaatagtagagataacgatattaggcatggtgagaaacgaaagaaatatcaaactc |
83 |
Q |
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| T |
24757282 |
cataggaattgaaataataatagtagagataacgatattaggcacggtgagaaacgaaagaaatattaaactc |
24757354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 158 - 318
Target Start/End: Original strand, 14909461 - 14909619
Alignment:
| Q |
158 |
aaaaccctaacaaaagtgtaaaactacttaaatgttgtctagaacagaaatttgttgcaccggaagttgttccttatatcgcactgcaaaatttgatgga |
257 |
Q |
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|||||||||| || ||||||| |||||||||||| ||||| |||||||||| | | |||| ||||||||| |||||| |||| ||||||||||| || |
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| T |
14909461 |
aaaaccctaaaaatagtgtaatactacttaaatg--gtctaaaacagaaattcatcgtaccgcaagttgttcaatatatcacactacaaaatttgattga |
14909558 |
T |
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| Q |
258 |
atgttgtgtggtgaaatctactagctcatattgtgagttgtcccaccggactacaagataa |
318 |
Q |
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| T |
14909559 |
atattgtgagctcaaatctactagctcataatgtgagttgtgccacatgaatacaagataa |
14909619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 303
Target Start/End: Complemental strand, 12414899 - 12414838
Alignment:
| Q |
242 |
tgcaaaatttgatggaatgttgtgtggtgaaatctactagctcatattgtgagttgtcccac |
303 |
Q |
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| T |
12414899 |
tgcaaaatttgattgaatgttgtgaggtaaaatctacttgtttatattgtgtgttgtcccac |
12414838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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