View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9450_low_2 (Length: 527)
Name: NF9450_low_2
Description: NF9450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9450_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 29654993 - 29655346
Alignment:
| Q |
1 |
ctttggtggactccccggacttggcggcgctggtggtggtggctttggtcaaccttgagtgacaagttaattactatgcaatttacttttcttaagaaac |
100 |
Q |
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| T |
29654993 |
ctttggtggactccccggacttggcggcgctggtggtggtggctttggtcaaccttgagtgacaagttaattactatgcaatttacttttcttaagaaac |
29655092 |
T |
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| Q |
101 |
taaattaaagttgggagtattgctatcacaatgttttagtgttttattaggtttttcatctagaggaagagtctttctagtattattttggtttctaatg |
200 |
Q |
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| T |
29655093 |
taaattaaagttgggagtattgctatcacaatgttttagtgttttattaggtttttcatctagaggaagagtcttcctagtattattttggtttctaatg |
29655192 |
T |
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| Q |
201 |
tgtgtgtactactaacgtacaagtttatttattagttataaatgttaaaaatttaagcatatgaacttttatatatttgcaatgtgtgcatgcttttctc |
300 |
Q |
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| T |
29655193 |
tgtgtgtacttctaacgtacaagtttatttattagttataaatgttaaaaatttaagcatatgaacttttatatatttgcaatgtgtgcatgcttttctc |
29655292 |
T |
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| Q |
301 |
tagaactcattcctgtcttattttct-gttttatatgattgtcattctgtcagc |
353 |
Q |
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| T |
29655293 |
tagaactcattcctgtcttattttctggttttatatgattgtcattctgtcagc |
29655346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 413 - 511
Target Start/End: Original strand, 29655404 - 29655502
Alignment:
| Q |
413 |
tatgcaaccttgtgggtgaatttttacatggagataaaagaaacaattttgtttaaattgagacgctgataccagttgagattgttagaacgagtgttg |
511 |
Q |
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| T |
29655404 |
tatgcaaccttgtgggtgaatttttacatggagataaaagaaacaattttgtttaaattgagacgctgatacgagttgagattgttagaacgagtgttg |
29655502 |
T |
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