View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9450_low_27 (Length: 304)
Name: NF9450_low_27
Description: NF9450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9450_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 7 - 289
Target Start/End: Original strand, 1050630 - 1050912
Alignment:
| Q |
7 |
tttggtgttgtatttcttcgtcaaaggtagagttctttggaatggcgaagctcttgaaaagtttactctcgggattcttcaaggagatcccatatctcct |
106 |
Q |
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| T |
1050630 |
tttggtgttgtatttcttcgtcaaaggtagagttctttggaatggcgaaactcttgaaaagtttactctcgggattcttcaaggagatcccatatctcct |
1050729 |
T |
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| Q |
107 |
tatttatttgttgtgtatggattaagcttacgatgggaagacttatgatttcttatcttcctttggcatatgatcttattttgttcgttgaggcaaatat |
206 |
Q |
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| T |
1050730 |
tatttatttgttgtgtatggattaagcttacgatgggaagacttatgatttcttatcttcctttggcatatgatcttattttgttcgttgaggcaaatat |
1050829 |
T |
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| Q |
207 |
ggagcagctagaactcatatctatggtccttgaagtgttatttaaaagttcaggtcaaaacgtcaataaagagaagtcatatg |
289 |
Q |
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| T |
1050830 |
ggagcagctagaactcatatctatggtccttgaagtgttatttaaaagttcaggtcaaaacgtcaataaagagaagtcatatg |
1050912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 7 - 109
Target Start/End: Original strand, 1050099 - 1050201
Alignment:
| Q |
7 |
tttggtgttgtatttcttcgtcaaaggtagagttctttggaatggcgaagctcttgaaaagtttactctcgggattcttcaaggagatcccatatctcct |
106 |
Q |
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| T |
1050099 |
tttggtgttgtatttcttcgtcaaaggtagagttctttggaatggcgaaactcttgaaaagtttactctcgggattcttcaaggagatcccatatctcct |
1050198 |
T |
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| Q |
107 |
tat |
109 |
Q |
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||| |
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| T |
1050199 |
tat |
1050201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 7 - 109
Target Start/End: Original strand, 1050276 - 1050378
Alignment:
| Q |
7 |
tttggtgttgtatttcttcgtcaaaggtagagttctttggaatggcgaagctcttgaaaagtttactctcgggattcttcaaggagatcccatatctcct |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1050276 |
tttggtgttgtatttcttcgtcaaaggtagagttctttggaatggcgaaactcttgaaaagtttactctcgggattcttcaaggagatcccatatctcct |
1050375 |
T |
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| Q |
107 |
tat |
109 |
Q |
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||| |
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| T |
1050376 |
tat |
1050378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 7 - 109
Target Start/End: Original strand, 1050453 - 1050555
Alignment:
| Q |
7 |
tttggtgttgtatttcttcgtcaaaggtagagttctttggaatggcgaagctcttgaaaagtttactctcgggattcttcaaggagatcccatatctcct |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1050453 |
tttggtgttgtatttcttcgtcaaaggtagagttctttggaatggcgaaactcttgaaaagtttactctcgggattcttcaaggagatcccatatctcct |
1050552 |
T |
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| Q |
107 |
tat |
109 |
Q |
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||| |
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| T |
1050553 |
tat |
1050555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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