View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9450_low_3 (Length: 501)
Name: NF9450_low_3
Description: NF9450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9450_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 14 - 486
Target Start/End: Original strand, 36769831 - 36770296
Alignment:
| Q |
14 |
aggctaggtttgcaaaaatttatttgttcttgtacatcggtttaattatatcctttgaaaatattgaattgtnnnnnnngaagatgtattttagcattaa |
113 |
Q |
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| T |
36769831 |
aggctaggtttgcagaaatttattcgttcttgtacatcggttta----tatcctttgaaaatattgaattgtaaaaaaagaagatgtattttagcattaa |
36769926 |
T |
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| Q |
114 |
aaagtcacaatataatagtttggcattatattatagtgannnnnnnnnnngttttgttgaaagaggtgttatagtgacttgatgcaaagaaattgactga |
213 |
Q |
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| T |
36769927 |
aaagtcacaatataatagtttggcattatattatagtgattttttttt---ttttgttgaaagaggtgttatagtgacttgatgcaaagaaattgactga |
36770023 |
T |
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| Q |
214 |
aagcaatatttgaaacaaagaagaagattcctaatcgatactggacttttctttatggaatttctttgatgcttgctgagtcttccgttaccgtgtatgg |
313 |
Q |
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| T |
36770024 |
aagcaatatttgaaacaaagaagaagattcctaatcgatattggacttttctttatggaatttgtttgatgcttgctgagtcttccgttactgtgtatgg |
36770123 |
T |
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| Q |
314 |
gtcagtcaaccaagtagcttttagatattaagattatagacttattcgtaatcttcaaatgagtatcctcttaacgataatgattttattaatcgtgatg |
413 |
Q |
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| T |
36770124 |
gtcagtcaaccaagtagcttttagatattaagagcatagacttattcgtaatcttcaaatgagtatcctcttaacgataatgattttattaatcgtgatg |
36770223 |
T |
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| Q |
414 |
taatggctnnnnnnntgtagcttccatatgaattagtcttatgtaataatatatatagattatagaccactgt |
486 |
Q |
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| T |
36770224 |
taatggctaaaaaaatgtagcttccatatgaattagtcttgtgtaataatatatatagattatagaccactgt |
36770296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 8 - 152
Target Start/End: Original strand, 36765826 - 36765966
Alignment:
| Q |
8 |
aagcaaaggctaggtttgcaaaaatttatttgttcttgtacatcggtttaattatatcctttgaaaatattgaattgtnnnnnnngaagatgtattttag |
107 |
Q |
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|||| ||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
36765826 |
aagctaaggctaggtttgcagaaatttattcgttcttgtacatcggttta----tatcctttgaaaatattgaattgtaaaagaagaagatgtattttag |
36765921 |
T |
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| Q |
108 |
cattaaaaagtcacaatataatagtttggcattatattatagtga |
152 |
Q |
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| T |
36765922 |
cattaaaaagtcacaatataatagtttggcattatattatagtga |
36765966 |
T |
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