View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9450_low_36 (Length: 248)
Name: NF9450_low_36
Description: NF9450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9450_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 38356926 - 38356726
Alignment:
| Q |
1 |
tttggatcaacttggcatgtcagctacttacggcaccgtaacatactgcagagcgcagacagactttgataggaagaaactatggtttattggatacaac |
100 |
Q |
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| T |
38356926 |
tttggatcaacttggcatgtcagctacttacggcaccgaaacatactgcagagcgcagacagactttgataggaagaaactatggtttattggatacaac |
38356827 |
T |
|
| Q |
101 |
tactttcatgccaaatccagactattataggaactaaaaattgaatttcatggttaaagaatgagcatcagaattaattatggactgattcggttctgcg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38356826 |
tactttcatgccaaatccagactattataggaactaaaaattgaatttcatggttaaagaatgagcatcagaattaattatggactgattcggttctgcg |
38356727 |
T |
|
| Q |
201 |
t |
201 |
Q |
| |
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| |
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| T |
38356726 |
t |
38356726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 47989975 - 47989838
Alignment:
| Q |
1 |
tttggatcaacttggcatgtcagctacttacggcaccgtaacatactgcagagcgcagacagactttgataggaagaaactatggtttattggatacaac |
100 |
Q |
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| T |
47989975 |
tttggatcagcttggcatgtcagccacttatggcacaagaacatactgcaga-------cagactttgataggaggaaactatggtttattgaataccac |
47989883 |
T |
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| Q |
101 |
tactttcatgccaaatccagactattataggaactaaaaattgaa |
145 |
Q |
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| T |
47989882 |
tactttcatgccaaatccagattattataggtactaaaaattgaa |
47989838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 168
Target Start/End: Complemental strand, 47979336 - 47979296
Alignment:
| Q |
128 |
taggaactaaaaattgaatttcatggttaaagaatgagcat |
168 |
Q |
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|||| |||||||||||||||||||||||||||||| ||||| |
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| T |
47979336 |
taggtactaaaaattgaatttcatggttaaagaataagcat |
47979296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 55 - 157
Target Start/End: Complemental strand, 48314990 - 48314888
Alignment:
| Q |
55 |
gcagacagactttgataggaagaaactatggtttattggatacaactactttcatgccaaatccagactattataggaactaaaaattgaatttcatggt |
154 |
Q |
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|||||||||||||||||||| |||||||| ||||| || |||| |||||||| ||| |||||||| ||||||||||| ||||||| || ||||||||| | |
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| T |
48314990 |
gcagacagactttgataggatgaaactatagtttactgaataccactactttaatgtcaaatccatactattataggtactaaaagtttaatttcatgat |
48314891 |
T |
|
| Q |
155 |
taa |
157 |
Q |
| |
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||| |
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|
| T |
48314890 |
taa |
48314888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 196 - 244
Target Start/End: Complemental strand, 40398373 - 40398325
Alignment:
| Q |
196 |
ctgcgtctcgtgatgtcagtccctgtttcatgtttccacctttgcttct |
244 |
Q |
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| T |
40398373 |
ctgcgtctcatgatgtcagtccctgtttcgtgtttccacctatgcttct |
40398325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 126
Target Start/End: Complemental strand, 26358534 - 26358467
Alignment:
| Q |
59 |
acagactttgataggaagaaactatggtttattggatacaactactttcatgccaaatccagactatt |
126 |
Q |
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||||||||| |||||| |||||||||||||| || ||| |||||||| |||||||||||| |||||| |
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| T |
26358534 |
acagacttttataggatgaaactatggtttactgaatatcactactttaatgccaaatccatactatt |
26358467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 148
Target Start/End: Complemental strand, 22876968 - 22876875
Alignment:
| Q |
55 |
gcagacagactttgataggaagaaactatggtttattggatacaactactttcatgccaaatccagactattataggaactaaaaattgaattt |
148 |
Q |
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||||||||| |||||||||| |||||||||||||| | |||| || | |||| | |||||||||||||| |||||| | |||| |||||||| |
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| T |
22876968 |
gcagacagagtttgataggaggaaactatggtttactcaataccaccaatttccttccaaatccagactactataggtattaaatgttgaattt |
22876875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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