View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9450_low_4 (Length: 450)
Name: NF9450_low_4
Description: NF9450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9450_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 20 - 440
Target Start/End: Original strand, 53788282 - 53788701
Alignment:
| Q |
20 |
actcggttgtattgcagtgtttcattcatcatcttaaactaatagagttgaactttggctaagaaaacgtggtgagtaatggtacccactcactctatct |
119 |
Q |
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| T |
53788282 |
actcggttgtattgcagtgtttcattcatcatcttaaactaatagagttgaactttggctgagaaaccgtggtgagtaatggtacccactcactctatct |
53788381 |
T |
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| Q |
120 |
ttgctatgatgtgaagtgtgagaaccggggatcccaatataagtgagtcgaacaccacactttaacataaaaccttaagatattgaattttatggatcct |
219 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||| | ||||||| |||| |
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| T |
53788382 |
ttgctatgatgtgaagtgtgagaaccgggaatcccaatataagtgagtccaacaccacactttaacctaaaaccttaagatattgga-tttatgggtcct |
53788480 |
T |
|
| Q |
220 |
ataatttataaaattcaatccccannnnnnnaagtaaggtgaaacttttaattcacactttctacacaacaatcttcgtctcatgtataaatataagtat |
319 |
Q |
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| T |
53788481 |
ataatttataaaattcaatccccatttttctaagtaacgtgaaacttttaattcacactttctacacaacaatcttcttctcatgtgtaaatataagtat |
53788580 |
T |
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| Q |
320 |
gtcaattcattatgctatcactcaaggaagttttttcatttacatacacttacttgcatcgttggtgtgacattcagcagagcacgccgtcaaaacacat |
419 |
Q |
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|||||||||||||||| |||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||| |
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| T |
53788581 |
gtcaattcattatgctcccacttaaggaagttttttcatctacatacacttacttgcaccgttggtgtgacattcagtggagcacgccatcaaaacactg |
53788680 |
T |
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| Q |
420 |
tgatagaaagactttcaacac |
440 |
Q |
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| T |
53788681 |
tgatagaaagactttcaacac |
53788701 |
T |
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