View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9450_low_41 (Length: 239)
Name: NF9450_low_41
Description: NF9450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9450_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 7623945 - 7623722
Alignment:
| Q |
1 |
aggtccaaaaccacttcctctaattggaaatttacaccagcttgacccttcatccccacatcactccctatggcaactctccaaatactatggacctatc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
7623945 |
aggtccaaaaccacttcctctaattggaaatttacaccagcttgacccttcatccccacatcactccttatggcaactctccaaacactatggacctatc |
7623846 |
T |
|
| Q |
101 |
atgtctttgaaacttggttacataccaaccttagttgtttcctcagcaaaaatggcagaacaagtgttgaaaactcacgaccttaaatttgcaagtagac |
200 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7623845 |
atgtctttgaaacttggatacataccaaccttagttgtttcctcagcaaaaatggcagaacaagtgttgaaaactcacgaccttaaatttgcaagtagac |
7623746 |
T |
|
| Q |
201 |
catcttttcttggactaagaaaat |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
7623745 |
catcttttcttggactaagaaaat |
7623722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 7630254 - 7630031
Alignment:
| Q |
1 |
aggtccaaaaccacttcctctaattggaaatttacaccagcttgacccttcatccccacatcactccctatggcaactctccaaatactatggacctatc |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
7630254 |
aggtccaaaaccatttcctctaattggaaatctacaccaacttgacccttcatccccacatcactccctatggcaactttccaaacactatggacctatc |
7630155 |
T |
|
| Q |
101 |
atgtctttgaaacttggttacataccaaccttagttgtttcctcagcaaaaatggcagaacaagtgttgaaaactcacgaccttaaatttgcaagtagac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7630154 |
atgtctttgaaacttggttacataccaaccttagttgtttcctcagcaaaaatggcagaacaagtgttgaaaactcacgaccttaaatttgcaagtagac |
7630055 |
T |
|
| Q |
201 |
catcttttcttggactaagaaaat |
224 |
Q |
| |
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|||||||||||||| | ||||||| |
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| T |
7630054 |
catcttttcttggatttagaaaat |
7630031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 7637037 - 7636814
Alignment:
| Q |
1 |
aggtccaaaaccacttcctctaattggaaatttacaccagcttgacccttcatccccacatcactccctatggcaactctccaaatactatggacctatc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||| |||||| |||||||||||||| |
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| T |
7637037 |
aggtccaaaaccacttcctctaattggaaatctacaccagcttgacccttcatccccacatcactccttatggaaactttccaaacactatggacctatc |
7636938 |
T |
|
| Q |
101 |
atgtctttgaaacttggttacataccaaccttagttgtttcctcagcaaaaatggcagaacaagtgttgaaaactcacgaccttaaatttgcaagtagac |
200 |
Q |
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||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
7636937 |
atgtctttgcaacttggttacataccaaccttaattgtttcctcagcaaaaatggcagaacaagtgttgaaaacccatgaccttaaatttgcaagtagac |
7636838 |
T |
|
| Q |
201 |
catcttttcttggactaagaaaat |
224 |
Q |
| |
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||||||| || ||||||||||||| |
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|
| T |
7636837 |
catctttcctaggactaagaaaat |
7636814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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