View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9450_low_45 (Length: 237)
Name: NF9450_low_45
Description: NF9450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9450_low_45 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 15 - 234
Target Start/End: Complemental strand, 38357353 - 38357134
Alignment:
| Q |
15 |
ccaaagccactagtcattgcacctggaggcttctttgatgaaaattggtttaaggagttcttaagcaaatcgggtgaatgggcagatgtggccacccacc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
38357353 |
ccaaagccactagtcattgcacctggaggcttctttgatgaaaattggtttaaggagttcttaagcaaatcgggtgaatgagcagatgtggccacccacc |
38357254 |
T |
|
| Q |
115 |
gcatttattttcttacatcgattgtaacagaaatctacttacatgcaggatataatgatcacataaccgaaaaaattctcgatccagcctatcttgatgg |
214 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
38357253 |
gcatttattttcttacatcgattttaacagaaatctacttacatgcaggatataatgatcgcataaccgaaaaaattctcgatccagcctatcttgatgg |
38357154 |
T |
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| Q |
215 |
agtggctggcacattcagca |
234 |
Q |
| |
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|||||||||||||||||||| |
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| T |
38357153 |
agtggctggcacattcagca |
38357134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 38355172 - 38355068
Alignment:
| Q |
18 |
aagccactagtcattgcacctggaggcttctttgatgaaaattggtttaaggagttcttaagcaaatcgggtgaatgggcagatgtggccacccaccgca |
117 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||| || ||| |||| |||||| | |||| | || |
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| T |
38355172 |
aagccactagtcattgcacctggaggcttctttgatgcaaattggtttaaggacttcttaagaaaatcagggaaattggcaaatgtggtcgcccatcaca |
38355073 |
T |
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| Q |
118 |
tttat |
122 |
Q |
| |
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||||| |
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| T |
38355072 |
tttat |
38355068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 120 - 234
Target Start/End: Complemental strand, 47979738 - 47979624
Alignment:
| Q |
120 |
tattttcttacatcgattgtaacagaaatctacttacatgcaggatataatgatcacataaccgaaaaaattctcgatccagcctatcttgatggagtgg |
219 |
Q |
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||||||| ||||||||| |||||||||| ||||||||||||||| | ||||||||||||||||||||||||| |||||| |||||||||||||||||| |
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| T |
47979738 |
tattttccaacatcgattataacagaaatttacttacatgcaggagttgatgatcacataaccgaaaaaattcttgatccaacctatcttgatggagtgg |
47979639 |
T |
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| Q |
220 |
ctggcacattcagca |
234 |
Q |
| |
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||||||||||||||| |
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| T |
47979638 |
ctggcacattcagca |
47979624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 47980201 - 47980097
Alignment:
| Q |
18 |
aagccactagtcattgcacctggaggcttctttgatgaaaattggtttaaggagttcttaagcaaatcgggtgaatgggcagatgtggccacccaccgca |
117 |
Q |
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||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||| || ||| | ||| ||||||||||| |||||||| || |
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| T |
47980201 |
aagccactaatcattgcacctggaggcttctttgatgcaaattggtttaagaagttcttaaacagatcagagaaattggcagatgtggtcacccaccaca |
47980102 |
T |
|
| Q |
118 |
tttat |
122 |
Q |
| |
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||||| |
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|
| T |
47980101 |
tttat |
47980097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 47990462 - 47990355
Alignment:
| Q |
15 |
ccaaagccactagtcattgcacctggaggcttctttgatgaaaattggtttaaggagttcttaagcaaatcgggtgaatgggcagatgtggccacccacc |
114 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||| || |||||| |||||||| |
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| T |
47990462 |
ccaaagccactcattattgcacctggaggcttctttgatgaaaattggtttaaggaattcttaaacaaatcggacgaatccacaaatgtggtcacccacc |
47990363 |
T |
|
| Q |
115 |
gcatttat |
122 |
Q |
| |
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||||||| |
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|
| T |
47990362 |
acatttat |
47990355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 132 - 234
Target Start/End: Complemental strand, 47990285 - 47990183
Alignment:
| Q |
132 |
tcgattgtaacagaaatctacttacatgcaggatataatgatcacataaccgaaaaaattctcgatccagcctatcttgatggagtggctggcacattca |
231 |
Q |
| |
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|||||| ||||||||| |||||||||| ||||| | || |||||| |||| ||||||||||||| ||| |||| ||||||||||||||| ||||| |
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| T |
47990285 |
tcgattataacagaaagctacttacatacaggaggtgatccgcacatagttgaaagaattctcgatccatcctctcttaatggagtggctggcatattca |
47990186 |
T |
|
| Q |
232 |
gca |
234 |
Q |
| |
|
||| |
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|
| T |
47990185 |
gca |
47990183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 22877826 - 22877756
Alignment:
| Q |
15 |
ccaaagccactagtcattgcacctggaggcttctttgatgaaaattggtttaaggagttcttaagcaaatc |
85 |
Q |
| |
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||||||||| |||||||||| |||||||| |||||||||| || ||||||||||| || |||||||||| |
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| T |
22877826 |
ccaaagccattagtcattgcgcctggaggtttctttgatgcaacgtggtttaaggattttataagcaaatc |
22877756 |
T |
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