View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9450_low_46 (Length: 233)
Name: NF9450_low_46
Description: NF9450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9450_low_46 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 37130474 - 37130256
Alignment:
| Q |
1 |
gcttcgctactcgcggttttcaatagaaggttggacattcgaggcgaaagaaaactttcattttccctcacgaacaaaagtgaaaatcaagaaaggaacc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||| |||| |||| |
|
|
| T |
37130474 |
gcttcgctactcgcggttttcaatagaaggttggacatttgaggcgaaa----actttcattttccctcacgtacaaaagtgaaaatcaataaagaaacc |
37130379 |
T |
|
| Q |
101 |
attttcttagtgagggttcctttcttcttttttgaacgacaaccttttactggtgtcatgcactccatcgacgagccaattaacctcccaagcccatggt |
200 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
37130378 |
atttttttagcgagggttcctttcttcttttttgaacgacaaccttttacctgtgtcatacactccatccacgagccaattaacctcccaagccgatggt |
37130279 |
T |
|
| Q |
201 |
tggaacagtgaccaatctaaatc |
223 |
Q |
| |
|
||||||| ||||||||||||||| |
|
|
| T |
37130278 |
tggaacaatgaccaatctaaatc |
37130256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 50 - 222
Target Start/End: Complemental strand, 37121858 - 37121693
Alignment:
| Q |
50 |
gaaaactttcattttccctcacgaacaaaagtgaaaatcaagaaaggaaccattttcttagtgagggttcctttcttcttttttgaacgacaacctttta |
149 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||||||||||||||| | ||| ||||||||||| |||| |||||||||| |||| |||| |
|
|
| T |
37121858 |
gaaaactttcattttcactcacatacaaaagtgaaaatcaagaaaggaac------cctagggagggttccttgcttc-tttttgaacggaaacccttta |
37121766 |
T |
|
| Q |
150 |
ctggtgtcatgcactccatcgacgagccaattaacctcccaagcccatggttggaacagtgaccaatctaaat |
222 |
Q |
| |
|
|| ||| | |||||||| || |||||||||||| |||| ||||||||||||||| ||| |||||||||| |
|
|
| T |
37121765 |
ctagtgctgtacactccattcacaggccaattaaccttccaaacccatggttggaacaatgagcaatctaaat |
37121693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University