View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9450_low_48 (Length: 230)
Name: NF9450_low_48
Description: NF9450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9450_low_48 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 230
Target Start/End: Complemental strand, 17347567 - 17347350
Alignment:
| Q |
13 |
gtatttactgctctgcaatctggacaatcgatgaatcacgtatcgtttaactttgaaattgaaataataaataagtaccttagagaccgagcttgttcaa |
112 |
Q |
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| T |
17347567 |
gtatttactgctctgcaatctggacaatcgatgaatcacgtatcgtttaactttgaaattgaaataataaataagtaccttagagaccgagcttgttcaa |
17347468 |
T |
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| Q |
113 |
cagaccaatcgatttcagtggttggtccaccaggaagaggaccagaaacacttcctgccgagttactataatgaagaatcgatgaagcattcagcacctg |
212 |
Q |
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| T |
17347467 |
cggaccaatcgatttcagtggttggtccaccaggaagaggaccagaaacacttcctgccgagttactataatgaagaatcgatgaagcattcagcacctg |
17347368 |
T |
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| Q |
213 |
tgacgtgaaccttgttgt |
230 |
Q |
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| T |
17347367 |
tgacgtgaaccttgttgt |
17347350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 13 - 230
Target Start/End: Original strand, 17136249 - 17136466
Alignment:
| Q |
13 |
gtatttactgctctgcaatctggacaatcgatgaatcacgtatcgtttaactttgaaattgaaataataaataagtaccttagagaccgagcttgttcaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17136249 |
gtatttactgctctgcaatctggacaatcgatgaatcacgtatcgtttaactttgaaattgaaataataaataagtaccttagagaccgagcttgttcaa |
17136348 |
T |
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| Q |
113 |
cagaccaatcgatttcagtggttggtccaccaggaagaggaccagaaacacttcctgccgagttactataatgaagaatcgatgaagcattcagcacctg |
212 |
Q |
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| T |
17136349 |
cggaccaatcgattttagtggttggtccagcaggaagaggaccagaaactcttctcgctgagtttctgtaatgaagaatcgatgaagcattcagcacctg |
17136448 |
T |
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| Q |
213 |
tgacgtgaaccttgttgt |
230 |
Q |
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| T |
17136449 |
tgacgtgaaccttgttgt |
17136466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 188
Target Start/End: Original strand, 37090963 - 37091051
Alignment:
| Q |
100 |
cgagcttgttcaacagaccaatcgatttcagtggttggtccaccaggaagaggaccagaaacacttcctgccgagttactataatgaag |
188 |
Q |
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| T |
37090963 |
cgagcttgttcaagagaccaatcgatttgagatgtgaggccacctgggggaggaccagaaacagtttttgccgagttactgtagtgaag |
37091051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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