View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9450_low_5 (Length: 422)
Name: NF9450_low_5
Description: NF9450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9450_low_5 |
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| [»] scaffold1120 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 18 - 413
Target Start/End: Complemental strand, 17687008 - 17686624
Alignment:
| Q |
18 |
agcagtcaacaccccaaccctaatttcatttctctctccgatttctaaaatcagacacaaaaaatcatctagtttctcaagaacactatgaacactaaag |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17687008 |
agcagtcaacaccccaaccctaatttcatttctctctccgatttctaaaatcagacacaaaaaatcatctagtttctcaagaacactatgaacactaaaa |
17686909 |
T |
|
| Q |
118 |
ttccagtatcatgatttcaccacaaaaaatacaaaagattccaaattaacaacacaaccaaatcgacggaaccgtaaatccaacacattcaagccataat |
217 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17686908 |
ttccagcatcatgatttcaccacaaaaaatacaaaagattccaaattaacaacacaaccaaatcgacggaaccgtaaatccaacacattcaagccataat |
17686809 |
T |
|
| Q |
218 |
tcaaccggaatcggagaaggagattggagcgtgaatcggatcaaaatggaacgtgaatcgaaataaatccgaaccgttttgagcaaggaagaagctagat |
317 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
17686808 |
tcaaccggaattggagaaggagattggagcgtgaatcggatcaaaatggagcgtgaatcgaaataaatccgaaccgttttgagcaaggaaga-------- |
17686717 |
T |
|
| Q |
318 |
cgaacgnnnnnnnnnnnnnctcagaagtataacctccaagatcgtaaccgatctaaagaggtaaccagtatcactttgttctttcttctcctttgc |
413 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17686716 |
---acgtttttttatttttctcagaagtataacctccaagatcgtaaccgatctaaagaggtaaccagtatcactttgttctttcttctcctttgc |
17686624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 18 - 255
Target Start/End: Complemental strand, 14538179 - 14537961
Alignment:
| Q |
18 |
agcagtcaacaccccaaccctaatttcatttctctctccgatttctaaaatcagacacaaaaaatcatctagtttctcaagaacactatgaacactaaag |
117 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |
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| T |
14538179 |
agcagtcaacacccaaaccctaatttcatttctctctccgatttctaaaatcaaacacaaaaaa-------------------cactatgaacactaaaa |
14538099 |
T |
|
| Q |
118 |
ttccagtatcatgatttcaccacaaaaaatacaaaagattccaaattaacaacacaaccaaatcgacggaaccgtaaatccaacacattcaagccataat |
217 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
14538098 |
ttccagtatcatgatttcactacaaaaaatacaaaagattccaagttaacaacacaaccaaatcgacagaaccgtaaatccaacacattcaagccataat |
14537999 |
T |
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| Q |
218 |
tcaaccggaatcggagaaggagattggagcgtgaatcg |
255 |
Q |
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| T |
14537998 |
tcaaccggaatcggagaaggagattggagcgtgaatcg |
14537961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 18 - 255
Target Start/End: Complemental strand, 41746265 - 41746047
Alignment:
| Q |
18 |
agcagtcaacaccccaaccctaatttcatttctctctccgatttctaaaatcagacacaaaaaatcatctagtttctcaagaacactatgaacactaaag |
117 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |
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| T |
41746265 |
agcagtcaacacccaaaccctaatttcatttctctctccgatttctaaaatcaaacacaaaaaa-------------------cactatgaacactaaaa |
41746185 |
T |
|
| Q |
118 |
ttccagtatcatgatttcaccacaaaaaatacaaaagattccaaattaacaacacaaccaaatcgacggaaccgtaaatccaacacattcaagccataat |
217 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
41746184 |
ttccagtatcatgatttcactacaaaaaatacaaaagattccaagttaacaacacaaccaaatcgacagaaccgtaaatccaacacattcaagccataat |
41746085 |
T |
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| Q |
218 |
tcaaccggaatcggagaaggagattggagcgtgaatcg |
255 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
41746084 |
tcaaccggaatcggagaaggagattggagcgtgaatcg |
41746047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 337 - 411
Target Start/End: Complemental strand, 32136984 - 32136910
Alignment:
| Q |
337 |
ctcagaagtataacctccaagatcgtaaccgatctaaagaggtaaccagtatcactttgttctttcttctccttt |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32136984 |
ctcagaagtataacctccaagatcgtaaccgatctaaagaggtaaccagtatcactttgttctttcttctccttt |
32136910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 322
Target Start/End: Complemental strand, 32137032 - 32137000
Alignment:
| Q |
290 |
accgttttgagcaaggaagaagctagatcgaac |
322 |
Q |
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| T |
32137032 |
accgttttgagcaaggaagaagctagatcgaac |
32137000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1120 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: scaffold1120
Description:
Target: scaffold1120; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 264 - 413
Target Start/End: Original strand, 41 - 194
Alignment:
| Q |
264 |
tggaacgtgaatcgaaataaatccgaaccgttttgagcaaggaagaagctagatcgaacgnnnnnnnnnnnnn----ctcagaagtataacctccaagat |
359 |
Q |
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|||| ||||||||||| ||||||||||||||||||||| | ||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
41 |
tggagcgtgaatcgaagtaaatccgaaccgttttgagcgaagaagaagctagatcggacgtttttttttttatttttctcagaagtataacctccaagat |
140 |
T |
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| Q |
360 |
cgtaaccgatctaaagaggtaaccagtatcactttgttctttcttctcctttgc |
413 |
Q |
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||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
141 |
cgtaaccgatctaaagaggtaaccagtgtcactttgttctctcttctcctttgc |
194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1120; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 202 - 255
Target Start/End: Original strand, 1 - 54
Alignment:
| Q |
202 |
acattcaagccataattcaaccggaatcggagaaggagattggagcgtgaatcg |
255 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1 |
acattcaagccataattcaaccggaatcggaggaggagattggagcgtgaatcg |
54 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 187 - 293
Target Start/End: Original strand, 13490956 - 13491062
Alignment:
| Q |
187 |
aaccgtaaatccaacacattcaagccataattcaaccggaatcggagaaggagattggagcgtgaatcggatcaaaatggaacgtgaatcgaaataaatc |
286 |
Q |
| |
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|||| |||||||||||||||||||||||||| |||||| ||||||||| | |||||||||||||||||||| ||||| || ||||||||||| || ||| |
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| T |
13490956 |
aaccttaaatccaacacattcaagccataatccaaccgaaatcggagaggaagattggagcgtgaatcggagcaaaacagagcgtgaatcgaagtacatc |
13491055 |
T |
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| Q |
287 |
cgaaccg |
293 |
Q |
| |
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||||||| |
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| T |
13491056 |
cgaaccg |
13491062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 187 - 255
Target Start/End: Original strand, 25652371 - 25652439
Alignment:
| Q |
187 |
aaccgtaaatccaacacattcaagccataattcaaccggaatcggagaaggagattggagcgtgaatcg |
255 |
Q |
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||||||||||||||||| ||||||||||||| ||||| ||||| ||||| |||||||||||||||||| |
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| T |
25652371 |
aaccgtaaatccaacacgttcaagccataatctaaccgaaatcgaagaagaagattggagcgtgaatcg |
25652439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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