View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9450_low_50 (Length: 230)
Name: NF9450_low_50
Description: NF9450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9450_low_50 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 15 - 214
Target Start/End: Original strand, 27645208 - 27645407
Alignment:
| Q |
15 |
ttctcatcatacaatatgaaaggcatgccttcatcttgaagccacactttgctgtataatacatatgtttactaagcaacttcttttagggtcaaaattc |
114 |
Q |
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| T |
27645208 |
ttctcatcatacaatgtgaaaggcatgccttcatcttgaagccacactttgctgtataatacatacgtttactaagcaacttcttttagggtcaaaattc |
27645307 |
T |
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| Q |
115 |
cgaatatattaataaaccagacggtatagtggaggaaaattgtaacagactttgtctacatcggtcaatggtgagcagcattttgagtgagcgatacaat |
214 |
Q |
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| T |
27645308 |
cgtatatattaataaaccagacggcatagtggaggaaaattgtaacagactttgtctacatcggtcaatggtgagcagcatttcgagtgagcgatacaat |
27645407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 42 - 214
Target Start/End: Original strand, 27647432 - 27647605
Alignment:
| Q |
42 |
ccttcatcttgaagccacactttgctgtataa--taca-tatgtttactaagcaacttcttttagggtcaaaattccgaatatattaataaaccagacgg |
138 |
Q |
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| T |
27647432 |
ccttcatcttgaag--acactttgctgtataaattataatacgttcactaagcaacttcttttaggctcaaaattccatatatattaagaaaccagacgg |
27647529 |
T |
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| Q |
139 |
tatagtggaggaaaattgtaacagactttgtctacatcggtcaatggtgagcagcattttgagtgagcgatacaat |
214 |
Q |
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| T |
27647530 |
catagtgcaggaaaattgtaacagactttgtctgcatcggtcaatggtgagcagcattctaagtgaacgatacaat |
27647605 |
T |
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