View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9450_low_53 (Length: 227)
Name: NF9450_low_53
Description: NF9450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9450_low_53 |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 211
Target Start/End: Complemental strand, 22011616 - 22011422
Alignment:
| Q |
17 |
gtacaattattttattatttattatgttaaacatgaaacggtgcgtttcacttaatctgtcctaattcaaaatttgggtattcattcctagtagttgatt |
116 |
Q |
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| T |
22011616 |
gtacaattattttattatatattatgttaaacatgaaacggtgcgtttcacttaatctgtcctaattcaaaatttgggtattcattcctagtagttgatt |
22011517 |
T |
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| Q |
117 |
tggagactctattaaaatggcagcaactcaatacaattcacaactattggtggtaaatattggtatatgatgggtaaattcatgtcaagggtttg |
211 |
Q |
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| T |
22011516 |
tggagactctattaaaatggcagcaactcaatacaattcacaactattggtggtaaatattggtatatgatgggtaaattcatgtcaagggtttg |
22011422 |
T |
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Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 211
Target Start/End: Complemental strand, 44313543 - 44313349
Alignment:
| Q |
17 |
gtacaattattttattatttattatgttaaacatgaaacggtgcgtttcacttaatctgtcctaattcaaaatttgggtattcattcctagtagttgatt |
116 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44313543 |
gtacaattattttattatatattatgttaaacatgaaacggtgcgtttcacttaatctgtcctaattcaaaatttgggtattcattcctagtagttgatt |
44313444 |
T |
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| Q |
117 |
tggagactctattaaaatggcagcaactcaatacaattcacaactattggtggtaaatattggtatatgatgggtaaattcatgtcaagggtttg |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44313443 |
tggagactctattaaaatggcagcaactcaatacaattcacaactattggtggtaaatattggtatatgatgggtaaattcatgtcaagggtttg |
44313349 |
T |
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