View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9450_low_6 (Length: 390)
Name: NF9450_low_6
Description: NF9450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9450_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 55 - 382
Target Start/End: Original strand, 31758088 - 31758408
Alignment:
| Q |
55 |
aaacacatattaatggatcaagtttaatgacactttttagtttactatcatgggagtcattgtgtatttaatacgtattttcatcaaattttacttgtca |
154 |
Q |
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| T |
31758088 |
aaacacatattagtgggtcaagtttaatgacactttttagtttattatcatgggagtcattgtgtatttaatacgtattttcatcaaattttacttgtca |
31758187 |
T |
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| Q |
155 |
ttagagtaaattaccccatattcatcaaggaataatataggtttcaccnnnnnnnnnnnnnnnacaatcaattatcattttcatctcaaaatatcaaact |
254 |
Q |
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| T |
31758188 |
ttagagtaaattaccccttattcatcaaggaataatatagattttaccttttttgtttttcttacaatcaattaccattttcatcttaaaatatcaaact |
31758287 |
T |
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| Q |
255 |
tcttaatctccatctttttccgatccaaaatcgcatcatacttttcatgagggatccaaactagtcgtgtcttggattatgtttgagccaaacatgacct |
354 |
Q |
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| T |
31758288 |
tcttaatctccatcttttt-cgttccaaaattgcatcatatttttcatgagggatccaaactagtcgtgtcttggattatgtttgagc------tgacct |
31758380 |
T |
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| Q |
355 |
tttgtatgaacaattaattgaaccacca |
382 |
Q |
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| T |
31758381 |
tttgtatgaacaattaattgaaccacca |
31758408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 261
Target Start/End: Complemental strand, 20206522 - 20206478
Alignment:
| Q |
218 |
acaatcaattatcattttcatctcaa-aatatcaaacttcttaat |
261 |
Q |
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| T |
20206522 |
acaatcaattatcattttcatctcaataacatcaaacttcttaat |
20206478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 261
Target Start/End: Complemental strand, 22100545 - 22100501
Alignment:
| Q |
218 |
acaatcaattatcattttcatctcaa-aatatcaaacttcttaat |
261 |
Q |
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| T |
22100545 |
acaatcaattatcattttcatctcaataacatcaaacttcttaat |
22100501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 265
Target Start/End: Complemental strand, 32166699 - 32166654
Alignment:
| Q |
221 |
atcaattatcattttcatctcaa-aatatcaaacttcttaatctcc |
265 |
Q |
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| T |
32166699 |
atcaattatcattttcatctcaagaacatcaaacttcttcatctcc |
32166654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 184
Target Start/End: Complemental strand, 2243292 - 2243249
Alignment:
| Q |
141 |
aattttacttgtcattaga-gtaaattaccccatattcatcaagg |
184 |
Q |
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| T |
2243292 |
aattttacttgtcattagaggtaaattacccca-attcatcaagg |
2243249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 264
Target Start/End: Complemental strand, 7113678 - 7113634
Alignment:
| Q |
221 |
atcaattatcattttcatctcaa-aatatcaaacttcttaatctc |
264 |
Q |
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||||||||||||||||||||||| ||||| ||||||||| ||||| |
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| T |
7113678 |
atcaattatcattttcatctcaagaatattaaacttcttcatctc |
7113634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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