View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9450_low_8 (Length: 366)
Name: NF9450_low_8
Description: NF9450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9450_low_8 |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 180 - 355
Target Start/End: Original strand, 38228005 - 38228177
Alignment:
| Q |
180 |
tgaattcgatgaaagatttagtacctgaaggcacatcttgactgccggatccttattctctgatgttcgtttacaaaacaatccatgagctggctagtta |
279 |
Q |
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| T |
38228005 |
tgaattcgataatagatcaagtacctgaaggcacatcttgactgccggatccttgttctctg---ttcattaacaaaataattagtatgctgcctagtta |
38228101 |
T |
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| Q |
280 |
taacagtaaggtgaaaattaatttatgcactcacatgcttttaatgagaaaagataagccaagctaaatcagaata |
355 |
Q |
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| T |
38228102 |
taacagtaaggtcaaagttaagttatgcattcacaagcttttaatggaaaaagagaagccaagctaaaccagaata |
38228177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 127
Target Start/End: Original strand, 38227539 - 38227646
Alignment:
| Q |
20 |
taagttctagtttcctagtgctagtggagtttctatcatgactgtaggcatttgcctctttacttagatacaggcattgcaaaatttggttcatattcct |
119 |
Q |
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| T |
38227539 |
taagttctagtttgcttatgtgagtggagttttcatcatgactgtaggcatatgcctctttaagtagatagaagcattgcaaaatctggttgatattcct |
38227638 |
T |
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| Q |
120 |
ttcagaga |
127 |
Q |
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| T |
38227639 |
ctcagaga |
38227646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 25 - 111
Target Start/End: Original strand, 16697983 - 16698068
Alignment:
| Q |
25 |
tctagtttcctagtgctagtggagtttctatcatgactgtaggcatttgcctctttacttagatacaggcattgcaaaatttggttc |
111 |
Q |
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| T |
16697983 |
tctagtttgctagtgctag-ggagtttcaatcatgactgtaggcatttgcctctttacttaggtacaagcattgcaaaatttggttc |
16698068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 107
Target Start/End: Original strand, 103363 - 103400
Alignment:
| Q |
70 |
tttgcctctttacttagatacaggcattgcaaaatttg |
107 |
Q |
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| T |
103363 |
tttgcctctttacttagatacaagcatttcaaaatttg |
103400 |
T |
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