View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9451_high_1 (Length: 588)
Name: NF9451_high_1
Description: NF9451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9451_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 544; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 1 - 577
Target Start/End: Complemental strand, 53096661 - 53096085
Alignment:
| Q |
1 |
tgctgctatttgcaactccaaacacgatttgatggaaagttgttcttcaggtggaaaggtaagaaactaaaaattcatgcttagtattgttgttttgcat |
100 |
Q |
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| T |
53096661 |
tgctgctatttgcaactccaaacacgatttgatggaaagttgttcttcaggtggaaaggtaagaaactaaaaattcatgcttagtattgttgttttgcat |
53096562 |
T |
|
| Q |
101 |
gattaagaagtttttcatcatagttgatgcactccactcaaatgcctattagttgtttccaataataaatgtttaatgacaatgcagatttccgaacctg |
200 |
Q |
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| T |
53096561 |
gattaagaagtttttcatcatagttgatgctctccactcaaatgcctattagttgtttccaataataaatgtttaatgacgatgcagatttccgaacctg |
53096462 |
T |
|
| Q |
201 |
ttgttcataaaaagtcatggaagagttgtgcagctcatgttcacattagtcagctcatccggagtttagaagttccnnnnnnncatggtgccaaagaacc |
300 |
Q |
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| T |
53096461 |
ttgttcataaaaagtcatggaagagttgtgcagctcatgttcacattagtcagctcatccggagtttagaagttccaaaaaaacatggtgccaaagaacc |
53096362 |
T |
|
| Q |
301 |
cgagcgttatgaatgtcaccaacccagagtacaccaaggatcaaagtgtggagttctaatcaaagcacaaaactcaaatgggactagaaatggaaatagt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
53096361 |
cgagcgttatgaatgtcaccaacccagagtacaccaaggatcaaagtgtggagttctaatcaaagcacaaaactcaaatgggacgagaaatggaaatagt |
53096262 |
T |
|
| Q |
401 |
tttgatgttggaacagttcattctgctagtttggacatttttcctgaaactaaaaatggtattcttcagcagcagtgccattatcttgacatatctctct |
500 |
Q |
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| T |
53096261 |
tttgatgttggaacagttcattctgctagtttggacatttttcctgaaactaaaaatggtattcttcagcagcagtgccattatcttgacatatctctct |
53096162 |
T |
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| Q |
501 |
ctaaggatcctccgatgcctgcaaaatgtgatcctctaaagcaagtaagcttatgaatgcttttggtaatgatgtcc |
577 |
Q |
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| T |
53096161 |
ctaaggatcctccgatgcctgcaaaatgtgatcctctaaagcaagtaagcttatgaatgcttttggtaatgatgtcc |
53096085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 289 - 438
Target Start/End: Original strand, 1369335 - 1369483
Alignment:
| Q |
289 |
tgccaaagaacccgagcgttatgaatgtcaccaacccagagtacaccaaggatcaaagtgtggagttctaatcaaagcacaaaactcaaatgggactaga |
388 |
Q |
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|||||||||| | ||||||||||||||||||||| ||||||| |||||| ||||||| ||| | | |||||||||||||||||||| ||||||| ||| |
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| T |
1369335 |
tgccaaagaatctgagcgttatgaatgtcaccaaaccagagttcaccaaagatcaaaatgtata-tcctaatcaaagcacaaaactctaatgggatgaga |
1369433 |
T |
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| Q |
389 |
aatggaaatagttttgatgttggaacagttcattctgctagtttggacat |
438 |
Q |
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| T |
1369434 |
aatggaaatagttttgatgctggaacagttcatactactagtttggacat |
1369483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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