View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9451_low_11 (Length: 354)

Name: NF9451_low_11
Description: NF9451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9451_low_11
NF9451_low_11
[»] chr1 (1 HSPs)
chr1 (11-318)||(5130451-5130767)
[»] chr5 (14 HSPs)
chr5 (11-141)||(8677636-8677766)
chr5 (11-141)||(9074865-9074995)
chr5 (11-140)||(8528778-8528907)
chr5 (9-141)||(1600423-1600555)
chr5 (49-141)||(8535332-8535424)
chr5 (49-141)||(8548274-8548366)
chr5 (49-141)||(8644043-8644135)
chr5 (49-138)||(8636701-8636790)
chr5 (9-104)||(8641242-8641337)
chr5 (49-125)||(9003317-9003393)
chr5 (11-115)||(2845169-2845273)
chr5 (49-117)||(2905127-2905195)
chr5 (49-115)||(2857028-2857094)
chr5 (184-218)||(36551390-36551424)
[»] scaffold0627 (1 HSPs)
scaffold0627 (49-141)||(4491-4583)
[»] chr7 (3 HSPs)
chr7 (11-115)||(35779694-35779798)
chr7 (49-141)||(48362032-48362129)
chr7 (184-218)||(46355860-46355894)
[»] chr6 (1 HSPs)
chr6 (52-141)||(16716178-16716267)
[»] chr4 (2 HSPs)
chr4 (11-140)||(9442939-9443068)
chr4 (186-218)||(49370040-49370072)
[»] chr3 (2 HSPs)
chr3 (184-218)||(26990456-26990490)
chr3 (184-218)||(53519824-53519858)
[»] chr2 (4 HSPs)
chr2 (184-218)||(2610832-2610866)
chr2 (184-218)||(17429294-17429328)
chr2 (184-218)||(39709205-39709239)
chr2 (184-221)||(33504468-33504505)


Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 11 - 318
Target Start/End: Complemental strand, 5130767 - 5130451
Alignment:
Q  11 caaagtttttcgaattcatgggactcgttcagaaaagattgaagtaattccacatattccaagtctaatttcaatgaaggatattgtgaaaggagacaat 110  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||    
T  5130767 caaagtttttcgaattcatgggacttgttcaaaaaagattgaagtaattccacatatttcaagtctaatttcactaaaggatattgtgaaaggagacaat 5130668  T
Q  111 attgaggtgctgaatatacactcaaggtaagtggcttctaaaattttatttacccaaatgaatctgatgctccccgaccccacttagtgagatatggctt 210  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  5130667 attgaggtgctgaatattcactcaaggtaagtggcttctaaaattttatttacccaaatgaatctgatgctccccgaccccacttaatgagatatggctt 5130568  T
Q  211 ggtt---------gttgaatctgaggctcccttaaaaatcaatcgtaattagtttgattcataagacatgtgtgagtttcctacattaccgtactgcctg 301  Q
    ||||         ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  5130567 ggttgttgttgttgttgaatctgaggcttccttaaaaatcaatcgtaattagtttgattcataagacatgtgtgagtttcctacattactgtaccgcctg 5130468  T
Q  302 tgctttgattttcattt 318  Q
    |||||||||||||||||    
T  5130467 tgctttgattttcattt 5130451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 11 - 141
Target Start/End: Complemental strand, 8677766 - 8677636
Alignment:
Q  11 caaagtttttcgaattcatgggactcgttcagaaaagattgaagtaattccacatattccaagtctaatttcaatgaaggatattgtgaaaggagacaat 110  Q
    |||||||||||||||||| || |||  ||| |||    ||||| ||||||||||| ||||||||||||| ||| |||||||| |||||||||||||||||    
T  8677766 caaagtttttcgaattcacggcacttcttccgaatttgttgaaataattccacatgttccaagtctaatctcattgaaggatgttgtgaaaggagacaat 8677667  T
Q  111 attgaggtgctgaatatacactcaaggtaag 141  Q
    ||||||||||||||||| |||||||||||||    
T  8677666 attgaggtgctgaatatccactcaaggtaag 8677636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 11 - 141
Target Start/End: Original strand, 9074865 - 9074995
Alignment:
Q  11 caaagtttttcgaattcatgggactcgttcagaaaagattgaagtaattccacatattccaagtctaatttcaatgaaggatattgtgaaaggagacaat 110  Q
    ||||||||||||||||||||||| || |||| |     |||||||||| |||||||||||||||||||||||| |||||||| |  ||||||||||||||    
T  9074865 caaagtttttcgaattcatgggagtcattcaaagttttttgaagtaatcccacatattccaagtctaatttcattgaaggatgtcttgaaaggagacaat 9074964  T
Q  111 attgaggtgctgaatatacactcaaggtaag 141  Q
    || |||||||||||||| |||||||||||||    
T  9074965 atcgaggtgctgaatatccactcaaggtaag 9074995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 11 - 140
Target Start/End: Complemental strand, 8528907 - 8528778
Alignment:
Q  11 caaagtttttcgaattcatgggactcgttcagaaaagattgaagtaattccacatattccaagtctaatttcaatgaaggatattgtgaaaggagacaat 110  Q
    ||||||||||||||||||||||| |||   | |  |  |||||||||| ||||| |||||||||||||||||| |||||||| || ||||||||| ||||    
T  8528907 caaagtttttcgaattcatgggagtcggataaattattttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttgaaaggagtcaat 8528808  T
Q  111 attgaggtgctgaatatacactcaaggtaa 140  Q
    |||||||| |||||||| ||||||||||||    
T  8528807 attgaggttctgaatatccactcaaggtaa 8528778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 9 - 141
Target Start/End: Original strand, 1600423 - 1600555
Alignment:
Q  9 tgcaaagtttttcgaattcatgggactcgttcagaaaagattgaagtaattccacatattccaagtctaatttcaatgaaggatattgtgaaaggagaca 108  Q
    ||||||| ||||  ||||||||||| |||||||||     ||||| |||| || ||||||||||||||||||||| |||||||| |  ||||||| ||||    
T  1600423 tgcaaagcttttgaaattcatgggagtcgttcagattgttttgaaataatcccgcatattccaagtctaatttcattgaaggatgtcttgaaaggggaca 1600522  T
Q  109 atattgaggtgctgaatatacactcaaggtaag 141  Q
    ||||||||||||||||||| |||||||||||||    
T  1600523 atattgaggtgctgaatatccactcaaggtaag 1600555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 49 - 141
Target Start/End: Complemental strand, 8535424 - 8535332
Alignment:
Q  49 ttgaagtaattccacatattccaagtctaatttcaatgaaggatattgtgaaaggagacaatattgaggtgctgaatatacactcaaggtaag 141  Q
    |||||||||| ||||| |||||||||||||||||| |||||||| || ||||||| |||||||||||||| |||||||| |||||||||||||    
T  8535424 ttgaagtaatcccacacattccaagtctaatttcattgaaggatgttttgaaaggtgacaatattgaggttctgaatatccactcaaggtaag 8535332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 49 - 141
Target Start/End: Original strand, 8548274 - 8548366
Alignment:
Q  49 ttgaagtaattccacatattccaagtctaatttcaatgaaggatattgtgaaaggagacaatattgaggtgctgaatatacactcaaggtaag 141  Q
    |||||||||||| |||||||||||||||||| ||| |||||||| |  ||||||||||||||||||||||||||||||| ||||||| |||||    
T  8548274 ttgaagtaattcaacatattccaagtctaatctcattgaaggatgtcatgaaaggagacaatattgaggtgctgaatatccactcaaagtaag 8548366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 49 - 141
Target Start/End: Complemental strand, 8644135 - 8644043
Alignment:
Q  49 ttgaagtaattccacatattccaagtctaatttcaatgaaggatattgtgaaaggagacaatattgaggtgctgaatatacactcaaggtaag 141  Q
    ||||| ||||||||||| ||||||||||||| ||| |||||||| |||||||||||||||||| |||| |||||||||| |||||||||||||    
T  8644135 ttgaaataattccacatgttccaagtctaatctcattgaaggatgttgtgaaaggagacaatactgagatgctgaatatccactcaaggtaag 8644043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 49 - 138
Target Start/End: Complemental strand, 8636790 - 8636701
Alignment:
Q  49 ttgaagtaattccacatattccaagtctaatttcaatgaaggatattgtgaaaggagacaatattgaggtgctgaatatacactcaaggt 138  Q
    ||||| ||||||||||| ||||||||||||| ||| |||||||| | ||||||||||||||||| |||||||||||||| ||||||||||    
T  8636790 ttgaaataattccacatgttccaagtctaatctcattgaaggatgtcgtgaaaggagacaatatcgaggtgctgaatatccactcaaggt 8636701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 9 - 104
Target Start/End: Complemental strand, 8641337 - 8641242
Alignment:
Q  9 tgcaaagtttttcgaattcatgggactcgttcagaaaagattgaagtaattccacatattccaagtctaatttcaatgaaggatattgtgaaagga 104  Q
    |||||||||||   ||||||||||||| |||||||||   ||||||||||||||||||||||||||||||| ||| |||||||| | |||||||||    
T  8641337 tgcaaagttttcaaaattcatgggacttgttcagaaagagttgaagtaattccacatattccaagtctaatctcattgaaggatgtcgtgaaagga 8641242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 49 - 125
Target Start/End: Complemental strand, 9003393 - 9003317
Alignment:
Q  49 ttgaagtaattccacatattccaagtctaatttcaatgaaggatattgtgaaaggagacaatattgaggtgctgaat 125  Q
    ||||||||||||||||||||||||||||||| ||| |||||||   ||| || ||||||||| |||||||| |||||    
T  9003393 ttgaagtaattccacatattccaagtctaatctcattgaaggaggctgtaaatggagacaatgttgaggtgttgaat 9003317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 115
Target Start/End: Original strand, 2845169 - 2845273
Alignment:
Q  11 caaagtttttcgaattcatgggactcgttcagaaaagattgaagtaattccacatattccaagtctaatttcaatgaaggatattgtgaaaggagacaat 110  Q
    |||||||||||||||||| |||||   || || | |  |||||||||||  | |||||||||||||||| ||| |||| ||| | |||||||||||||||    
T  2845169 caaagtttttcgaattcaagggacaactttaggagaagttgaagtaattgaatatattccaagtctaatatcattgaacgatgtcgtgaaaggagacaat 2845268  T
Q  111 attga 115  Q
     ||||    
T  2845269 gttga 2845273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 117
Target Start/End: Original strand, 2905127 - 2905195
Alignment:
Q  49 ttgaagtaattccacatattccaagtctaatttcaatgaaggatattgtgaaaggagacaatattgagg 117  Q
    ||||||| |||| |||||||||||||||||| ||| |||| ||| | ||||| ||||||||| ||||||    
T  2905127 ttgaagttattcaacatattccaagtctaatatcattgaaagatgtcgtgaatggagacaatgttgagg 2905195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 115
Target Start/End: Original strand, 2857028 - 2857094
Alignment:
Q  49 ttgaagtaattccacatattccaagtctaatttcaatgaaggatattgtgaaaggagacaatattga 115  Q
    |||||||||||  | |||||||||||||||| ||| |||| ||| | ||||||||||||||| ||||    
T  2857028 ttgaagtaattgaatatattccaagtctaatatcattgaacgatgtcgtgaaaggagacaatgttga 2857094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 218
Target Start/End: Original strand, 36551390 - 36551424
Alignment:
Q  184 ccgaccccacttagtgagatatggcttggttgttg 218  Q
    ||||||||||||||||||||| |||||||||||||    
T  36551390 ccgaccccacttagtgagataaggcttggttgttg 36551424  T

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Target: scaffold0627 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 49 - 141
Target Start/End: Complemental strand, 4583 - 4491
Alignment:
Q  49 ttgaagtaattccacatattccaagtctaatttcaatgaaggatattgtgaaaggagacaatattgaggtgctgaatatacactcaaggtaag 141  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||   |||||||||||||||||||||||| ||||||| |||||||||||||    
T  4583 ttgaagtaattccacatattccaagtctaatctcattgaaggatgccgtgaaaggagacaatattgaggtgttgaatatccactcaaggtaag 4491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 11 - 115
Target Start/End: Complemental strand, 35779798 - 35779694
Alignment:
Q  11 caaagtttttcgaattcatgggactcgttcagaaaagattgaagtaattccacatattccaagtctaatttcaatgaaggatattgtgaaaggagacaat 110  Q
    ||||||||||||||||| ||||||||||||| ||    ||||||||||||||||||||||||||||||| ||| |||||||| |||| ||||||||||||    
T  35779798 caaagtttttcgaattcgtgggactcgttcaaaatctgttgaagtaattccacatattccaagtctaatatcattgaaggatgttgtaaaaggagacaat 35779699  T
Q  111 attga 115  Q
    |||||    
T  35779698 attga 35779694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 141
Target Start/End: Original strand, 48362032 - 48362129
Alignment:
Q  49 ttgaagtaattccacatattccaagtctaattt-----caatgaaggatattgtgaaaggagacaatattgaggtgctgaatatacactcaaggtaag 141  Q
    |||||||||| ||||||||||||||||||||||     || |||||||| |  |||||||||| ||||| |||||| ||||| | |||||||||||||    
T  48362032 ttgaagtaatcccacatattccaagtctaatttaatttcattgaaggatgtcttgaaaggagataatatggaggtgttgaatgtccactcaaggtaag 48362129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 218
Target Start/End: Complemental strand, 46355894 - 46355860
Alignment:
Q  184 ccgaccccacttagtgagatatggcttggttgttg 218  Q
    ||||||||||||||||||||| |||||||||||||    
T  46355894 ccgaccccacttagtgagataaggcttggttgttg 46355860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 52 - 141
Target Start/End: Complemental strand, 16716267 - 16716178
Alignment:
Q  52 aagtaattccacatattccaagtctaatttcaatgaaggatattgtgaaaggagacaatattgaggtgctgaatatacactcaaggtaag 141  Q
    |||||||||||||||||||||||||||| ||| ||||||||   ||||||||||| |||||||||||| ||||||| |||||||||||||    
T  16716267 aagtaattccacatattccaagtctaatctcattgaaggatgccgtgaaaggagagaatattgaggtgttgaatatccactcaaggtaag 16716178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 140
Target Start/End: Complemental strand, 9443068 - 9442939
Alignment:
Q  11 caaagtttttcgaattcatgggactcgttcagaaaagattgaagtaattccacatattccaagtctaatttcaatgaaggatattgtgaaaggagacaat 110  Q
    ||||||||||||||||||||||| |||   | |  |  |||||||||| | ||| |||||||||||||||||| |||||||| || ||||||||| ||||    
T  9443068 caaagtttttcgaattcatgggagtcggaaaaattattttgaagtaatccaacacattccaagtctaatttcattgaaggatgttttgaaaggagtcaat 9442969  T
Q  111 attgaggtgctgaatatacactcaaggtaa 140  Q
    |||||||| |||||||| ||||||||||||    
T  9442968 attgaggttctgaatatccactcaaggtaa 9442939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 218
Target Start/End: Original strand, 49370040 - 49370072
Alignment:
Q  186 gaccccacttagtgagatatggcttggttgttg 218  Q
    |||||||||||||| ||||||||||||||||||    
T  49370040 gaccccacttagtgggatatggcttggttgttg 49370072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 218
Target Start/End: Original strand, 26990456 - 26990490
Alignment:
Q  184 ccgaccccacttagtgagatatggcttggttgttg 218  Q
    ||||||||||||||||||||| |||||||||||||    
T  26990456 ccgaccccacttagtgagataaggcttggttgttg 26990490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 218
Target Start/End: Original strand, 53519824 - 53519858
Alignment:
Q  184 ccgaccccacttagtgagatatggcttggttgttg 218  Q
    ||||||||||||||||||||| |||||||||||||    
T  53519824 ccgaccccacttagtgagataaggcttggttgttg 53519858  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 218
Target Start/End: Original strand, 2610832 - 2610866
Alignment:
Q  184 ccgaccccacttagtgagatatggcttggttgttg 218  Q
    ||||||||||||||||||||| |||||||||||||    
T  2610832 ccgaccccacttagtgagataaggcttggttgttg 2610866  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 218
Target Start/End: Original strand, 17429294 - 17429328
Alignment:
Q  184 ccgaccccacttagtgagatatggcttggttgttg 218  Q
    ||||||||||||||||||||| |||||||||||||    
T  17429294 ccgaccccacttagtgagataaggcttggttgttg 17429328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 218
Target Start/End: Complemental strand, 39709239 - 39709205
Alignment:
Q  184 ccgaccccacttagtgagatatggcttggttgttg 218  Q
    |||||||||||||||| ||||||||||||||||||    
T  39709239 ccgaccccacttagtgggatatggcttggttgttg 39709205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 33504468 - 33504505
Alignment:
Q  184 ccgaccccacttagtgagatatggcttggttgttgaat 221  Q
    |||||||||||||||| |||| ||||||||||||||||    
T  33504468 ccgaccccacttagtgggataaggcttggttgttgaat 33504505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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