View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9451_low_14 (Length: 279)
Name: NF9451_low_14
Description: NF9451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9451_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 17 - 227
Target Start/End: Original strand, 13509498 - 13509708
Alignment:
| Q |
17 |
aaatacttcaccaaaggtgatgttgcaccaagtgaagaggaactcaagaatggcaaagctaggggtgatggtcttttcaaggctcttgaaggttacgttt |
116 |
Q |
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| T |
13509498 |
aaatacttcaccaaaggtgatgttgcaccaagtgaagaggaactcaagaatggcaaagctaggggtgatggtcttttcaaagctcttgaaggttatgttt |
13509597 |
T |
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| Q |
117 |
tggcaaatcctgattactaaagcatatagctaattgcttgcttgctttatacatggtgtgttgtgatgcattttattgtatcaagtgtgtttgatttggc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
13509598 |
tggcaaatcctgattactaaagcatatagctaattgcttacttgctttatacatggcgtgttgtaatgcattttattgtatcaagtgtgcttgatttggt |
13509697 |
T |
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| Q |
217 |
ttccaatgtaa |
227 |
Q |
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| T |
13509698 |
tgccaatgtaa |
13509708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 13485737 - 13485935
Alignment:
| Q |
17 |
aaatacttcaccaaaggtgatgttgcaccaagtgaagaggaactcaagaatggcaaagctaggggtgatggtcttttcaaggctcttgaaggttacgttt |
116 |
Q |
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|||||||||||||||||||||| |||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13485737 |
aaatacttcaccaaaggtgatgctgcacctagtgaagaggaaatcaagggtggcaaagctaggggtgatggtcttttcaaggctcttgaaggttacgttt |
13485836 |
T |
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| Q |
117 |
tggcaaatcctgattactaaagcatatagctaattgcttgcttgctttatacatggtgtgttgtgatgcattttattgtatcaagtgtgtttgatttgg |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| | ||||||||| |
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| T |
13485837 |
tggcaaatcctgattactaaagcatatagctaattgcttgcttgctttatacatggtgtgttgtgatgcattttattatatcatgtgggcttgatttgg |
13485935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 13492176 - 13492374
Alignment:
| Q |
17 |
aaatacttcaccaaaggtgatgttgcaccaagtgaagaggaactcaagaatggcaaagctaggggtgatggtcttttcaaggctcttgaaggttacgttt |
116 |
Q |
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|||||||||||||||||||||| |||||| |||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13492176 |
aaatacttcaccaaaggtgatgctgcacctagtgaagaggaaatcaagggtggaaaagctaggggtgatggtcttttcaaggctcttgaaggttacgttt |
13492275 |
T |
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| Q |
117 |
tggcaaatcctgattactaaagcatatagctaattgcttgcttgctttatacatggtgtgttgtgatgcattttattgtatcaagtgtgtttgatttgg |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||| | ||||||||| |
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| T |
13492276 |
tggcaaatcctgattactaaagcatatagctaattgcttgcttgctttatacacggtgtgttgtgatgcattttattatatcatgtgggcttgatttgg |
13492374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 17 - 227
Target Start/End: Original strand, 13515256 - 13515464
Alignment:
| Q |
17 |
aaatacttcaccaaaggtgatgttgcaccaagtgaagaggaactcaagaatggcaaagctaggggtgatggtcttttcaaggctcttgaaggttacgttt |
116 |
Q |
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||||||||||| ||||| |||||| | |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| | || |||||| || |
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| T |
13515256 |
aaatacttcacaaaaggagatgttactccaagtgaagaggaactcaagagtggcaaagctaagggtgatggtcttttcaaggctatagagggttactgtt |
13515355 |
T |
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| Q |
117 |
tggcaaatcctgatt---actaaagcatatagctaattgcttgcttgctttatacatggtgtgttgtgatgcattttattgtatcaagtgtgtttgattt |
213 |
Q |
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|||| |||||||||| |||||||||||||| || |||||||| |||| ||| |||||||||| ||||||||| |||| |||||| || |||| |
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| T |
13515356 |
tggctaatcctgattacaactaaagcatatag-----tgtgtgcttgctctataaatgttgtgttgtgacacattttattatatctagtgtgcttaattt |
13515450 |
T |
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| Q |
214 |
ggcttccaatgtaa |
227 |
Q |
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|| | ||||||||| |
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| T |
13515451 |
ggatgccaatgtaa |
13515464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 13501453 - 13501569
Alignment:
| Q |
17 |
aaatacttcaccaaaggtgatgttgcaccaagtgaagaggaactcaagaatggcaaagctaggggtgatggtcttttcaaggctcttgaaggttacgttt |
116 |
Q |
| |
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|||||||| || ||||| |||||| | |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||| |||||| || |
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| T |
13501453 |
aaatactttacaaaaggagatgttactccaagtgaagaggaactcaagagtggcaaagctaagggtgatggtcttttcaaggcccttgagggttactgtt |
13501552 |
T |
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| Q |
117 |
tggcaaatcctgattac |
133 |
Q |
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|||| |||||||||||| |
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| T |
13501553 |
tggctaatcctgattac |
13501569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 134
Target Start/End: Original strand, 13520769 - 13520801
Alignment:
| Q |
102 |
ttgaaggttacgttttggcaaatcctgattact |
134 |
Q |
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||||||||||| ||||||||||||||||||||| |
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| T |
13520769 |
ttgaaggttaccttttggcaaatcctgattact |
13520801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 137
Target Start/End: Original strand, 13554692 - 13554736
Alignment:
| Q |
93 |
tcaaggctcttgaaggttacgttttggcaaatcctgattactaaa |
137 |
Q |
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||||||| |||| |||||||||||||||||||||||||| |||| |
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| T |
13554692 |
tcaaggccattgagggttacgttttggcaaatcctgattattaaa |
13554736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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