View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9451_low_16 (Length: 250)
Name: NF9451_low_16
Description: NF9451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9451_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 31075814 - 31075586
Alignment:
| Q |
1 |
caataatcaagtgcatgaaaggtacaagaaaggtcttgcagagttcctagtattattcttatttatttgattaccaacaccaatcaagggattttgattt |
100 |
Q |
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| T |
31075814 |
caataatcaagtgcatgaaaggtacaagaaaggtcttggagagttcctagtattattcttatttatttgattaccaacaccaatcaagggattttgattc |
31075715 |
T |
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| Q |
101 |
ggttccttatcatgcccccttaatctagtgggcggagttggatacacgcctagcttgctgtgaaatgtgttaagaaagaatctttagcaagtgttttctt |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
31075714 |
ggttccttatcatgcccccttaatctagtgggtggagttggatacacgcctagcttgctgtgaaatgtgttaagaaagaatccctagctagtgttttctt |
31075615 |
T |
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| Q |
201 |
gaagacataagcaagtgagcattattttt |
229 |
Q |
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| T |
31075614 |
gaagacataagcaagtgagcattattttt |
31075586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 59 - 169
Target Start/End: Original strand, 11308948 - 11309058
Alignment:
| Q |
59 |
ttatttatttgattaccaacaccaatcaagggattttgatttggttccttatcatgcccccttaatctagtgggcggagttggatacacgcctagcttgc |
158 |
Q |
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| T |
11308948 |
ttatttattttataatcagcacctatcaagggattttgactttgttccttatcatgccccctcaagctagtgggtggacttggatacacgcctagcttgc |
11309047 |
T |
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| Q |
159 |
tgtgaaatgtg |
169 |
Q |
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|| |||||||| |
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| T |
11309048 |
tgcgaaatgtg |
11309058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 112
Target Start/End: Complemental strand, 13443422 - 13443369
Alignment:
| Q |
59 |
ttatttatttgattaccaacaccaatcaagggattttgatttggttccttatca |
112 |
Q |
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|||||||||| || | ||||| | |||||||||||||||||| ||||||||||| |
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| T |
13443422 |
ttatttattttataatcaacatctatcaagggattttgattttgttccttatca |
13443369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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