View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9451_low_21 (Length: 217)
Name: NF9451_low_21
Description: NF9451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9451_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 54270243 - 54270063
Alignment:
| Q |
18 |
tgttagcaatggaagaagtactatgtgaacttagtgatcatgaaaagaaaaacgagcaaggtctaccacctggtttcaggtttcacccaactgatgaaga |
117 |
Q |
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| T |
54270243 |
tgttagcaatggaagaagtactatgtgaacttagtgatcatgaaaagaaaaacgagcaaggtctaccacctggtttcaggtttcacccaactgatgaaga |
54270144 |
T |
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| Q |
118 |
actcattaccttttatttggcttctaaggttttcaaaaatacttatttcaataatgtcaagtttgctgaagttgacctcaa |
198 |
Q |
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| T |
54270143 |
actcattaccttttatttggcttctaaggttttcaaaaatacttatttcaataatgtcaagtttgctgaagttgacctcaa |
54270063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 118
Target Start/End: Original strand, 44370830 - 44370867
Alignment:
| Q |
81 |
taccacctggtttcaggtttcacccaactgatgaagaa |
118 |
Q |
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| T |
44370830 |
taccacctggtttcagatttcaccctactgatgaagaa |
44370867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 120
Target Start/End: Complemental strand, 28664374 - 28664335
Alignment:
| Q |
81 |
taccacctggtttcaggtttcacccaactgatgaagaact |
120 |
Q |
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| T |
28664374 |
taccaccaggtttcaggtttcatccaactgatgaagaact |
28664335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 126
Target Start/End: Complemental strand, 31607249 - 31607202
Alignment:
| Q |
79 |
tctaccacctggtttcaggtttcacccaactgatgaagaactcattac |
126 |
Q |
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| T |
31607249 |
tctacctcctggttttaggtttcatccaacagatgaagaactcattac |
31607202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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