View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9452_1 (Length: 644)
Name: NF9452_1
Description: NF9452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9452_1 |
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| [»] scaffold0363 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 90 - 507
Target Start/End: Complemental strand, 4203378 - 4202961
Alignment:
| Q |
90 |
ctctttaccttcatcagcttccttaagtgttggttttggcatttttccacttctcactgctacaccttgcatgccacaacaacaatctcaaaacaatgaa |
189 |
Q |
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| T |
4203378 |
ctctttaccttcatcagcttcattaagtgttggttttggcatttttccacttctcactgctacaccttgcatgccacaacaacaatctcaaaacaatgaa |
4203279 |
T |
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| Q |
190 |
gttcaagaaaatcctagtaacaataacaatttttggaaccttaggatgtgtcctgaagtagtgaatcttccnnnnnnnggagtgatcaatgaagaagaga |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
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| T |
4203278 |
gttcaagaaaatcctagtaacaataacaatttttggaatcttaggatgtgtcctgaagtagtgaatcttccaaaaaaaggagtgatcactgaagaagaga |
4203179 |
T |
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| Q |
290 |
atcatggaaaaattgctatgatggagagtgaagaaaatggtgtgtatggttctgagtatagagtttgtcaagattgtggtaatagggctaagaaagattg |
389 |
Q |
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| T |
4203178 |
atcatggaaaaattgctatgatggagagtgaagaaaatggtgtgtatggttctgagtatagagtgtgtcaagattgtggtaatagggctaagaaagattg |
4203079 |
T |
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| Q |
390 |
tgtgtttagaagatgtaggacttgttgtaagggacgtggttatgattgtagtactcatttgaagagtacttggattccttcgacacgtcgtcgagaacgg |
489 |
Q |
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| T |
4203078 |
tgtgtttagaagatgtaggacttgttgtaagggacgtggttatgattgtagtactcatttgaagagtacttggattccttcgacacgtcgtcgagaacgg |
4202979 |
T |
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| Q |
490 |
gaggtggagatgtttgcc |
507 |
Q |
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| T |
4202978 |
gaggtggagatgtttgcc |
4202961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 536 - 616
Target Start/End: Complemental strand, 4202944 - 4202864
Alignment:
| Q |
536 |
agggttgttctggtgttaagagacaaaaaggtttattagggtcatcccaaaatgctgctgctacttctcatagctctaact |
616 |
Q |
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| T |
4202944 |
agggttgttctggtgttaagagacaaaaaggtttattagggtcatcacaaaatgctgctgctacttctcatagctctaact |
4202864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0363 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: scaffold0363
Description:
Target: scaffold0363; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 342 - 464
Target Start/End: Complemental strand, 17082 - 16960
Alignment:
| Q |
342 |
tgagtatagagtttgtcaagattgtggtaatagggctaagaaagattgtgtgtttagaagatgtaggacttgttgtaagggacgtggttatgattgtagt |
441 |
Q |
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| T |
17082 |
tgagtttagggtttgtcaagattgtggaaatagagctaagaaagattgtagctataaaagatgtaggacttgttgtaaaggtcgtggatttgattgtagt |
16983 |
T |
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| Q |
442 |
actcatttgaagagtacttggat |
464 |
Q |
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| T |
16982 |
actcacgtgaagagcacgtggat |
16960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 342 - 464
Target Start/End: Original strand, 14512731 - 14512853
Alignment:
| Q |
342 |
tgagtatagagtttgtcaagattgtggtaatagggctaagaaagattgtgtgtttagaagatgtaggacttgttgtaagggacgtggttatgattgtagt |
441 |
Q |
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||||| ||| ||||||||||||||||| ||||| ||||||||||||||| | || ||||||||||||||||||||| || ||||| | |||||||||| |
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| T |
14512731 |
tgagtttagggtttgtcaagattgtggaaatagagctaagaaagattgtagctataaaagatgtaggacttgttgtaaaggtcgtggatttgattgtagt |
14512830 |
T |
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| Q |
442 |
actcatttgaagagtacttggat |
464 |
Q |
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| T |
14512831 |
actcacgtgaagagcacgtggat |
14512853 |
T |
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