View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9452_2 (Length: 506)
Name: NF9452_2
Description: NF9452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9452_2 |
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Alignment Details
Target: chr3 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 18 - 477
Target Start/End: Complemental strand, 47048009 - 47047550
Alignment:
| Q |
18 |
ggacatcatcgtaatttcaaaataagcttcttgtggaaaaacatagtttcctaaaacaggaccaggtaatggtaaagctgttctaataacagaagtaacc |
117 |
Q |
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| T |
47048009 |
ggacaacatcgtaatttcaaaataagcttcttgtggaaaaacatagtttcctaaaacaggaccaggtaatggtaaagctgttctaataacagaagtaacc |
47047910 |
T |
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| Q |
118 |
atagaattattttgaataacttgattagattttcttaatccaggattcaatctaactttctgcataaactcatctgatccacgtgaaacttcccaactaa |
217 |
Q |
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| T |
47047909 |
atagaattattttgaataacttgattagattttcttaatccaggattcaatctaactttctgcataaactcatctgatccacgtgaaacttcccaactaa |
47047810 |
T |
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| Q |
218 |
tctcagcttcagatgattctcttcgataatcacctacaggtgcacatgatcctaacagtgtaaccttctttgatggcgatggcatgtaacttttatagct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47047809 |
tctcagcttcagatgattctcttcgataatcacctacaggtgcacatgatcctaacagtgtaaccttctttgatggcgatggcatgtaacttttatagct |
47047710 |
T |
|
| Q |
318 |
agtgaaagcaaatcttgaccatccattttcaacagcatcagcagccatagatggattttcaatccagctgaacaagtttgttgttctttttccagaaaca |
417 |
Q |
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| T |
47047709 |
agtgaaagcaaatcttgaccatccattttcaacagcatcagcagccatagatggattttcaatccagctgaacaagtttgttgttctttttccagaaaca |
47047610 |
T |
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| Q |
418 |
taactgcgaaacagagaattattattgttcttgttactaccttgttctaattgatgatgg |
477 |
Q |
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| T |
47047609 |
taactgcgaaacagagaattattattgttcttgttactaccttgttctaattgatgatgg |
47047550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 373 - 475
Target Start/End: Original strand, 16291603 - 16291702
Alignment:
| Q |
373 |
ttttcaatccagctgaacaagtttgttgttctttttccagaaacataactgcgaaacagagaattattattgttcttgttactaccttgttctaattgat |
472 |
Q |
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||||||| |||||||||||| |||||||||||||||||| |||||| ||||| |||||||| ||||||||| |||||||||||| |||||||||||| |
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| T |
16291603 |
ttttcaacccagctgaacaaatttgttgttctttttccaaaaacattactgcagaacagaga---attattgttattgttactacctcgttctaattgat |
16291699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 313 - 392
Target Start/End: Original strand, 5656251 - 5656330
Alignment:
| Q |
313 |
tagctagtgaaagcaaatcttgaccatccattttcaacagcatcagcagccatagatggattttcaatccagctgaacaa |
392 |
Q |
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| T |
5656251 |
tagctagtgaaagcaaatcttgaccatccattttctatagcatcagaagctagatatggatgatcattccagttgaacaa |
5656330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 5655966 - 5656018
Alignment:
| Q |
31 |
atttcaaaataagcttcttgtggaaaaacatagtttcctaaaacaggaccagg |
83 |
Q |
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|||||||||||||||||||||||||| ||| ||| || |||| ||||||||| |
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| T |
5655966 |
atttcaaaataagcttcttgtggaaatgcatggttccccaaaaaaggaccagg |
5656018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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