View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9452_3 (Length: 410)
Name: NF9452_3
Description: NF9452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9452_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 15 - 292
Target Start/End: Complemental strand, 43233443 - 43233167
Alignment:
| Q |
15 |
gagaagaaaaataaacttataccgtagacttcaagtcaacctaaaatgaatttgaaatggttgtaggtaaaataacttgcaggggtgacaaaattacaat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43233443 |
gagaagaaaaataaacttataccgtagacttcaagtcaacctaaaatgaatttgaaatggttgtaggtaaaataacttgcaggggtgacaaaattacaat |
43233344 |
T |
|
| Q |
115 |
tgaaagaaatacatttgatttgaaacatatgagtaaacaaaattggtaatcctctatgtatt---gctgatattggacacctaaacaaacttgcatccca |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
|
|
| T |
43233343 |
tgaaagaaatacatttgatttgaaacatatgagtaaacaaaattggtaatcctctatgtattgctgctgatattggacacctaaacaaacttgcatccga |
43233244 |
T |
|
| Q |
212 |
aatttaatttgaaagggtgacactgccaacttttcccactccttatactttgctctatttgaatcattgttttctccaaca |
292 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43233243 |
aat----tttgaaagggtgacactgccaacttttcccactccttatactttgctctatttgaatcattgttttctccaaca |
43233167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 356 - 399
Target Start/End: Complemental strand, 43233103 - 43233060
Alignment:
| Q |
356 |
gagtaatttaacaatgagattcaagctcaagaatatgaaaaact |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43233103 |
gagtaatttaacaatgagattcaagctcaagaatatgaaaaact |
43233060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 222 - 273
Target Start/End: Complemental strand, 31982640 - 31982589
Alignment:
| Q |
222 |
gaaagggtgacactgccaacttttcccactccttatactttgctctatttga |
273 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||||| || |||||||||| |
|
|
| T |
31982640 |
gaaagggtgacactgcctacttttcccactctttatacgttactctatttga |
31982589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 149
Target Start/End: Complemental strand, 31982982 - 31982922
Alignment:
| Q |
89 |
acttgcaggggtgacaaaattacaattgaaagaaatacatttgatttgaaacatatgagta |
149 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||| ||||| |||| |||| |||||||| |
|
|
| T |
31982982 |
acttgcaggtgtgacaaagttacaattgaaagaaaaacattagattcaaaacgtatgagta |
31982922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 15 - 149
Target Start/End: Complemental strand, 8024395 - 8024261
Alignment:
| Q |
15 |
gagaagaaaaataaacttataccgtagacttcaagtcaacctaaaatgaatttgaaatggttgtaggtaaaataacttgcaggggtgacaaaattacaat |
114 |
Q |
| |
|
|||||||||||||||||| || | |||||||||||||||||| ||||||||| ||| |||||||||||||| |||||||||| | |||||| |||| || |
|
|
| T |
8024395 |
gagaagaaaaataaacttgtagcatagacttcaagtcaacctgaaatgaattcaaaaaggttgtaggtaaaaaaacttgcaggtgggacaaagttaccat |
8024296 |
T |
|
| Q |
115 |
tgaaagaaatacatttgatttgaaacatatgagta |
149 |
Q |
| |
|
||||||||| ||||| |||| |||| |||||||| |
|
|
| T |
8024295 |
tgaaagaaaaacattagattcaaaacgtatgagta |
8024261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 222 - 273
Target Start/End: Complemental strand, 8023595 - 8023544
Alignment:
| Q |
222 |
gaaagggtgacactgccaacttttcccactccttatactttgctctatttga |
273 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||||| || |||||||||| |
|
|
| T |
8023595 |
gaaagggtgacactgcctacttttcccactctttatacgttactctatttga |
8023544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 15 - 149
Target Start/End: Complemental strand, 18647618 - 18647484
Alignment:
| Q |
15 |
gagaagaaaaataaacttataccgtagacttcaagtcaacctaaaatgaatttgaaatggttgtaggtaaaataacttgcaggggtgacaaaattacaat |
114 |
Q |
| |
|
|||||||||||||||||| || | |||||||||||||||||| ||||||||| ||| |||||||||||||| |||||||||| | |||||| |||| || |
|
|
| T |
18647618 |
gagaagaaaaataaacttgtagcatagacttcaagtcaacctgaaatgaattcaaaaaggttgtaggtaaaaaaacttgcaggtgggacaaagttaccat |
18647519 |
T |
|
| Q |
115 |
tgaaagaaatacatttgatttgaaacatatgagta |
149 |
Q |
| |
|
||||||||| |||| |||| |||| |||||||| |
|
|
| T |
18647518 |
tgaaagaaaatcattagattcaaaacgtatgagta |
18647484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 222 - 273
Target Start/End: Complemental strand, 18646821 - 18646770
Alignment:
| Q |
222 |
gaaagggtgacactgccaacttttcccactccttatactttgctctatttga |
273 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||||| || |||||||||| |
|
|
| T |
18646821 |
gaaagggtgacactgcctacttttcccactctttatacgttactctatttga |
18646770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University