View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9452_4 (Length: 342)
Name: NF9452_4
Description: NF9452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9452_4 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 32 - 342
Target Start/End: Complemental strand, 14620744 - 14620434
Alignment:
| Q |
32 |
ttaatgactttaaatgaattgtgaattggtgttgcaggtttctactactatgaaagacttgtgacatgatggttttggggttgctaaagaaaagaaagac |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
14620744 |
ttaatgactttaaatgaattgtgaattggtgttgcaggtttctactactatgaaagacttgtgccatgatgtttttggggttgctaaagaaaagaaagac |
14620645 |
T |
|
| Q |
132 |
cctaaagaagtgaagaccaatagaggtatatatccctttttcagttttaggtattgcttaacatagcatgttctattcagtttttgcttttgagtcattg |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14620644 |
cctaaagaagtgaagaccaatagaggtatatatccctttttcagttttaggtattgcttaacatagcatgttctattcagtttttgcttttgagtcattg |
14620545 |
T |
|
| Q |
232 |
tttttgcattaagcgcgttcttttctgattctctgcttctttgggcagatctgcttgatgtcttaccaagcaaaagaaaagctgaggatggcggctattt |
331 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14620544 |
tttttgcattaagcgcattcttttctgattctctgcttctttgggcagatctgcttgatgtcttaccaagcaaaagaaaagctgaggatggcggctattt |
14620445 |
T |
|
| Q |
332 |
gtctgatgatg |
342 |
Q |
| |
|
||||||||||| |
|
|
| T |
14620444 |
gtctgatgatg |
14620434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 32 - 342
Target Start/End: Original strand, 17709452 - 17709762
Alignment:
| Q |
32 |
ttaatgactttaaatgaattgtgaattggtgttgcaggtttctactactatgaaagacttgtgacatgatggttttggggttgctaaagaaaagaaagac |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
17709452 |
ttaatgactttaaatgaattgtgaattggtgttgtaggtttctactactatgaaagacttgtgccatgatgtttttggggttgctaaagaaaagaaagac |
17709551 |
T |
|
| Q |
132 |
cctaaagaagtgaagaccaatagaggtatatatccctttttcagttttaggtattgcttaacatagcatgttctattcagtttttgctttt-gagtcatt |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| || ||| | |
|
|
| T |
17709552 |
cctaaagaagtgaagaccaatagaggtatatacccctttttcagttttatgtattgcttaacatagcatgttctattcagttattgcttttcgattca-t |
17709650 |
T |
|
| Q |
231 |
gtttttgcattaagcgcgttcttttctgattctctgcttctttgggcagatctgcttgatgtcttaccaagcaaaagaaaagctgaggatggcggctatt |
330 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17709651 |
gtttttgcattaagcgtgttcttttctgattctctgcttctttgggcagatctgcttgatgtcttaccaagcaaaagaaaagctgaggatggcggctatt |
17709750 |
T |
|
| Q |
331 |
tgtctgatgatg |
342 |
Q |
| |
|
|||||||||||| |
|
|
| T |
17709751 |
tgtctgatgatg |
17709762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University