View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9452_5 (Length: 331)
Name: NF9452_5
Description: NF9452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9452_5 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 23 - 236
Target Start/End: Complemental strand, 42239376 - 42239163
Alignment:
| Q |
23 |
catcatgtgtgcaaatatttacacctaacaaaagaaatgttaataacacaaatattaagaaattggaccttttgataatggaatttgatgaaattgatca |
122 |
Q |
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| T |
42239376 |
catcatgtgtgcaaatatttacacctaacaaaagaaatgttaataacacaaatattaagaaattggaccttttgataatggaatttgatgaaattgatcg |
42239277 |
T |
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| Q |
123 |
tcatcaaaattgaatcctttttcgcccagaaattgttgtttttgtatgagacacatctcctgctgtgagttttgctctcttccaaatatgtttaatgaca |
222 |
Q |
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| T |
42239276 |
tgatcaaaattgaatcctttttcgcccagaaattgttgtttttgtatgagacacatctcctgctgtgagttttgctctcttccaaatatgtttaatgaca |
42239177 |
T |
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| Q |
223 |
ctaacagagaccga |
236 |
Q |
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|||||||||||||| |
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| T |
42239176 |
ctaacagagaccga |
42239163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 37 - 233
Target Start/End: Complemental strand, 17649959 - 17649763
Alignment:
| Q |
37 |
atatttacacctaacaaaagaaatgttaataacacaaatattaagaaa---ttggacctttt-gataatggaatttgatgaaattgatcatcatcaaaat |
132 |
Q |
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| T |
17649959 |
atatttacacctaacaaaataaatgttaataacacaaatattaaaaaaaaattggacctttttgataatggaacttgacgaaattgatcatgatccag-t |
17649861 |
T |
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| Q |
133 |
tgaatcctttttcgcccagaaattgttgtttttgtatgagacacatctcctgctgtgagttttgctctcttccaaatatgtttaatgacactaacagaga |
232 |
Q |
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| T |
17649860 |
tcaatcctttttcgcccacaatttgttgttttcctatgagacacatctcctg---tgagtttttctctcttccaaatacgtttaatgacactaacagaga |
17649764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 84 - 233
Target Start/End: Original strand, 42540845 - 42540991
Alignment:
| Q |
84 |
attggacctttt-gataatggaatttgatgaaattgatcatcatcaaaattgaatcctttttcgcccagaaattgttgtttttgtatgagacacatctcc |
182 |
Q |
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|||||||||||| |||||||||| |||| |||||||||||| ||| | || |||||||||||||||| || |||||||||| |||||||||||||||| |
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| T |
42540845 |
attggacctttttgataatggaacttgaagaaattgatcatgatccag-ttcaatcctttttcgcccacaatttgttgttttcctatgagacacatctcc |
42540943 |
T |
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| Q |
183 |
tgctgtgagttttgctctcttccaaatatgtttaatgacactaacagagac |
233 |
Q |
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|| ||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
42540944 |
tg---tgagttttgctctcttccaaatacgtttaatgacactaacagagac |
42540991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 84 - 233
Target Start/End: Complemental strand, 1328710 - 1328564
Alignment:
| Q |
84 |
attggacctttt-gataatggaatttgatgaaattgatcatcatcaaaattgaatcctttttcgcccagaaattgttgtttttgtatgagacacatctcc |
182 |
Q |
| |
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|||||||||||| |||||||||| |||| |||||||||||| ||| | || |||||||||||||||| || |||||||||| |||||||||||||||| |
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| T |
1328710 |
attggacctttttgataatggaacttgaagaaattgatcatgatccag-ttcaatcctttttcgcccacaatttgttgttttcctatgagacacatctcc |
1328612 |
T |
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| Q |
183 |
tgctgtgagttttgctctcttccaaatatgtttaatgacactaacagagac |
233 |
Q |
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|| ||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
1328611 |
tg---tgagttttgctctcttccaaatacgtttaatgacactaacagagac |
1328564 |
T |
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