View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9452_low_2 (Length: 365)
Name: NF9452_low_2
Description: NF9452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9452_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 15 - 349
Target Start/End: Original strand, 394539 - 394872
Alignment:
| Q |
15 |
agaaagtagaaacacaccaaacgtcttcctcctgcgctgccgtaccccaccccaccgtcctccactgttcataaaaccatggaggctctgaaggaactcc |
114 |
Q |
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| T |
394539 |
agaaagtagaaacacaccaaacgtcttcctcctgcgctgccgtacctcaccccaccgtcctccactgttcataaaaccatggaggctctgaaggaactcc |
394638 |
T |
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| Q |
115 |
ttccggaaccaaaatcatctacagcaacatactatcaccatagctacgatccttggtttaagcaactgttcaccgcaaccgaagaggagaaatcaattgt |
214 |
Q |
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| T |
394639 |
ttccggaaccaaaatcatctacagcaacatactatcaccatagctacgatccttggtttaagcaactgttcaccacaaccaaagaggag-aaccaattgt |
394737 |
T |
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| Q |
215 |
accaccgtatctgaaacgatccggttgaggatttcggtgaaggtggagctttcccggaaatccacgtgatacagtatccgcttgatatggaaaggaatga |
314 |
Q |
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| T |
394738 |
accaccgtatctgaaacgatccggttgaggatttcggtgaaggtggagctttcccggaaatccacgtgatacagtatccacttgatatggaaaggaatga |
394837 |
T |
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| Q |
315 |
gaattcgaagagattcttacggttacggttgatgt |
349 |
Q |
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| T |
394838 |
gaattcgaagagattcttacggttacggttgatgt |
394872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 89 - 208
Target Start/End: Complemental strand, 11456204 - 11456085
Alignment:
| Q |
89 |
aaccatggaggctctgaaggaactccttccggaaccaaaatcatctacagcaacatactatcaccatagctacgatccttggtttaagcaactgttcacc |
188 |
Q |
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| T |
11456204 |
aaccatggcggctctgaaggaactccttccagaaccaaaatcatccacaacaacatactatgatcatagcaacgatccatggtttaagcaaagattcact |
11456105 |
T |
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| Q |
189 |
gcaaccgaagaggagaaatc |
208 |
Q |
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| T |
11456104 |
gcaacggaagaggagaaatc |
11456085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 237 - 324
Target Start/End: Complemental strand, 11456021 - 11455934
Alignment:
| Q |
237 |
ggttgaggatttcggtgaaggtggagctttcccggaaatccacgtgatacagtatccgcttgatatggaaaggaatgagaattcgaag |
324 |
Q |
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| T |
11456021 |
ggttgaggattttggagaaggtggagctttcccggagatccatgtggcacagtatccgcttgatatgggaaggaataagaattcgaag |
11455934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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