View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9452_low_3 (Length: 311)
Name: NF9452_low_3
Description: NF9452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9452_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 37 - 310
Target Start/End: Complemental strand, 7413041 - 7412767
Alignment:
| Q |
37 |
tgaatgagtat-aaagaattattgaaaaatgaaatatattatagagttgtatttatgccaagcatcttttattaataagacaaatattattcccctaaaa |
135 |
Q |
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| T |
7413041 |
tgaatgagtatgaaagaattattgaaaaatgaaatacattatagagttgtatttatgtcaagcatcttttattaataagacaaatattattcccctaaaa |
7412942 |
T |
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| Q |
136 |
caaaagacaaatattttttatttaacttaaacaattaaattgggcatattttatgtgcaatttcataaactaatcatttgagcggtgtcgtgaaatccca |
235 |
Q |
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| T |
7412941 |
caaaagacaaatattttttatttaacttaaacaattaaattgggcatattttatgtgcaatttcataaactaatcatttgagcggtgtcgtgaaatccca |
7412842 |
T |
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| Q |
236 |
ttagagagatctaaaaagaattgttcacaggtctctcaagaattttggcactattatactctttttcttatattt |
310 |
Q |
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| T |
7412841 |
ttagagagatctaaaaagaattgttcataagtctctcaagaattttggcactattacactctttttcttatattt |
7412767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 48 - 127
Target Start/End: Original strand, 7379704 - 7379779
Alignment:
| Q |
48 |
aaagaattattgaaaaatgaaatatattatagagttgtatttatgccaagcatcttttattaataagacaaatattattc |
127 |
Q |
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| T |
7379704 |
aaagaattattgaaaaatgaaatatattatagagttg----tatgtcaagcatcttttattaataagacaaatattattc |
7379779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 139 - 310
Target Start/End: Original strand, 7379764 - 7379948
Alignment:
| Q |
139 |
aagacaaatattttttatttaacttaaacaattaaattgggcatattttatgtgcaatttcataaactaatcatttgagcggtgtcgtgaaatcccatta |
238 |
Q |
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| T |
7379764 |
aagacaaatattattcatttaacttaaataaat-aattgggtatatttcacgtgtaatttcagaaactaataatttgaacggtatcgtgaaatctcatta |
7379862 |
T |
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| Q |
239 |
gag-----agatct---------aaaaagaattgttcacaggtctctcaagaattttggcactattatactctttttcttatattt |
310 |
Q |
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| T |
7379863 |
gagtgtcaagatctctataaaaaaaaaaaaattgtttatatatctctcaagaattttggcactactacactctttttcttatattt |
7379948 |
T |
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