View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9452_low_4 (Length: 250)
Name: NF9452_low_4
Description: NF9452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9452_low_4 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 23 - 250
Target Start/End: Complemental strand, 27508739 - 27508512
Alignment:
| Q |
23 |
tatcaaaagtaagaaggatgtaactaagtaattgatgaagctaatgagttgtgctgtttgtgaaggagagatgaagtgtatttatagagtttgaagttat |
122 |
Q |
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| T |
27508739 |
tatcaaaagtaagaaggatgtaactaagtaattgatgatgctaatgagttgtgctgtttgtgaaggagagaggaagtgtatttatagagtttgaagttat |
27508640 |
T |
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| Q |
123 |
ctcaaaacccaattcctagaaaaactattattgaaggggtggaaggatagagagcatagtgataaggtagcatgtggtgttgtcttagagtgtaccctac |
222 |
Q |
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| T |
27508639 |
ctcaaaacccaattcctagaaaaactattattgaaggggtggaaggatagagagcatagtgataaggtagcatgtggtgctgtcttagagtgtaccctac |
27508540 |
T |
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| Q |
223 |
cttcttacacaatgtccaatacaaagct |
250 |
Q |
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| T |
27508539 |
cttcttaaacaatgtccaatacaaagct |
27508512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 24 - 250
Target Start/End: Complemental strand, 27503794 - 27503568
Alignment:
| Q |
24 |
atcaaaagtaagaaggatgtaactaagtaattgatgaagctaatgagttgtgctgtttgtgaaggagagatgaagtgtatttatagagtttgaagttatc |
123 |
Q |
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| T |
27503794 |
atcaaatgtaagatggatgtaattaagtatttgatgatgc-aatgaattgtgctgtttgtgaaggagagaggaagtgtatttatagagtttgaagttatc |
27503696 |
T |
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| Q |
124 |
tcaaaacccaattcctagaaaaactattattgaaggggtggaaggatagagagcatagtgataaggtagcatgtggtgttgtcttagagtgtaccctacc |
223 |
Q |
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| T |
27503695 |
tcaaaacccaattcctagaaaaactattattgaaggggtggaaggatagagatcatagggataatgtagcatgtggtgttgtcttagagtgtcccctacc |
27503596 |
T |
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| Q |
224 |
-ttcttacacaatgtccaatacaaagct |
250 |
Q |
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| T |
27503595 |
tttcctaaacaatgtccaatacaaagct |
27503568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 25 - 250
Target Start/End: Complemental strand, 27524394 - 27524170
Alignment:
| Q |
25 |
tcaaaagtaagaaggatgtaactaagtaattgatgaagctaatgagttgtgctgtttgtgaaggagagatgaagtgtatttatagagtttgaagttatct |
124 |
Q |
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||||| ||| ||||||||||||||| || ||||| | || |||||||| | |||||||||||||||||| ||||| ||| |||||| ||| ||||| ||| |
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| T |
27524394 |
tcaaatgtatgaaggatgtaactaaatatttgataatgc-aatgagtttttctgtttgtgaaggagagaggaagtttatatatagattttaaagttctct |
27524296 |
T |
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| Q |
125 |
caaaacccaattcctagaaaaactattattgaaggggtggaaggatagagagcatagtgataaggtagcatgtggtgttgtcttagagtgtaccctacct |
224 |
Q |
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| T |
27524295 |
caaacccaaatttcaagaaaaactattattgaaggggttgaaggatatagatcatagggataaggtagcatgtggtgttgtcttagagtgtaccctacct |
27524196 |
T |
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| Q |
225 |
tcttacacaatgtccaatacaaagct |
250 |
Q |
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| T |
27524195 |
tcttaaacaatatccaatacaaagct |
27524170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 40 - 250
Target Start/End: Original strand, 27475853 - 27476064
Alignment:
| Q |
40 |
atgtaactaagtaattgatgaagctaatgagttgtgctgtttgtgaaggagagatgaagtgtatttatagagtttgaagttatctcaaaacccaattcct |
139 |
Q |
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| T |
27475853 |
atgtaactaaatatttgatgatgccaatcagttgtgctgtttatgaaggagagaggaagtgtatttatagattttgaagttctctcaaaaccaaatttca |
27475952 |
T |
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| Q |
140 |
agaaaaactattattgaaggggtggaaggatagagagcatagtgataaggtagcatgtggtgttgtcttagagtgtaccctacc-ttcttacacaatgtc |
238 |
Q |
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| T |
27475953 |
agagaaactattattgaagggtttgatggatagagagcacagggataaggtagcatggggtgttgtcttagagtgtaccctacctttcctaaacaatgtc |
27476052 |
T |
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| Q |
239 |
caatacaaagct |
250 |
Q |
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|||||||||||| |
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| T |
27476053 |
caatacaaagct |
27476064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 44 - 250
Target Start/End: Original strand, 27468624 - 27468831
Alignment:
| Q |
44 |
aactaagtaattgatgaagctaatgagttgtgctgtttgtgaaggagagatgaagtgtatttatagagtttgaagttatctcaaaacccaattcctagaa |
143 |
Q |
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|||||| || ||||||| || |||||||||| ||||||||||||| |||| |||||||||||||||| ||||||||| |||||||| | |||| | | || |
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| T |
27468624 |
aactaaatatttgatgatgccaatgagttgtcctgtttgtgaaggcgagaggaagtgtatttatagattttgaagttctctcaaaatcaaatttcaacaa |
27468723 |
T |
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| Q |
144 |
aaactattattgaaggggtggaaggatagagagcatagtgataaggtagcatgtggtgttgtcttagagtgtaccctaccttcttacac-aatgtccaat |
242 |
Q |
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| T |
27468724 |
aaactattattgaagggtttgatggatagagagcatagggataaggtctcatgtggtgttgtctaagagtgtaccctaccttcttaaacaaatgtccaat |
27468823 |
T |
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| Q |
243 |
acaaagct |
250 |
Q |
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|||||||| |
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| T |
27468824 |
acaaagct |
27468831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 43 - 250
Target Start/End: Complemental strand, 27514736 - 27514530
Alignment:
| Q |
43 |
taactaagtaattgatgaagctaatgagttgtgctgtttgtgaaggagagatgaagtgtatttatagagtttgaagttatctcaaaacccaattcctaga |
142 |
Q |
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||||||| || ||||||| || ||||||||||||| || ||||||||||| |||||||||||||||| ||||||||| ||||| |||| |||| | ||| |
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| T |
27514736 |
taactaaatacttgatgatgccaatgagttgtgct--ttatgaaggagagaggaagtgtatttatagattttgaagttctctcagaaccaaatttcaaga |
27514639 |
T |
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| Q |
143 |
aaaactattattgaaggggtggaaggatagagagcatagtgataaggtagcatgtggtgttgtcttagagtgtaccctaccttcttacac-aatgtccaa |
241 |
Q |
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| T |
27514638 |
gaaactattattgaagggtttgatggatagagagcatagggataaggtctcatgtggtgttgtctaagagtgtaccctaccttcttaaacaaatgtccaa |
27514539 |
T |
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| Q |
242 |
tacaaagct |
250 |
Q |
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||||||||| |
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| T |
27514538 |
tacaaagct |
27514530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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