View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9452_low_5 (Length: 249)
Name: NF9452_low_5
Description: NF9452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9452_low_5 |
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| [»] scaffold2079 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 6333481 - 6333240
Alignment:
| Q |
1 |
acacaagtaagggaaagtctcaagctgatatcaacccaattatgatggctttagttttcatggtttctctttactacctggctttggtgcttgtgacatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6333481 |
acacaagtaagggaaagtctcaagctgatatcaacccaattatgatggctttagttttcatggtttctctttactacctggctttggtgcttgtgacatt |
6333382 |
T |
|
| Q |
101 |
gttgcatcttcacatcaagagtttccttccttccaagatgatcattcttttacttggaagtgttgtttcaattttagctttaatggttatttcgccgaca |
200 |
Q |
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||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| | ||||| || ||| |
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| T |
6333381 |
gttgcattttcacatcaagagtttctttccttccaagatgatcattcttttacttggaagtgttgtttcagttttagctttgatgataatttctcctaca |
6333282 |
T |
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| Q |
201 |
attgcttggatttattcgggtttgttgatcttcatctctgct |
242 |
Q |
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|||||||||||||||| |||||||||||||||||||| |||| |
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| T |
6333281 |
attgcttggatttatttgggtttgttgatcttcatctttgct |
6333240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 6326004 - 6325763
Alignment:
| Q |
1 |
acacaagtaagggaaagtctcaagctgatatcaacccaattatgatggctttagttttcatggtttctctttactacctggctttggtgcttgtgacatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |
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| T |
6326004 |
acacaagtaagggaaagtctcaagctgatatcaaaacaattatgatggctttagttttcatggtttctctttactacctggctttggtgcttgtaacaat |
6325905 |
T |
|
| Q |
101 |
gttgcatcttcacatcaagagtttccttccttccaagatgatcattcttttacttggaagtgttgtttcaattttagctttaatggttatttcgccgaca |
200 |
Q |
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| T |
6325904 |
gatacatattcacatcaagagattcattccttccaagatgatcattcttttacttggaagtgttgtttcaattttagctttaatggttatttcgccgaca |
6325805 |
T |
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| Q |
201 |
attgcttggatttattcgggtttgttgatcttcatctctgct |
242 |
Q |
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| T |
6325804 |
attgcatggatttatttgggtttttggatctttatctttgct |
6325763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 42 - 242
Target Start/End: Original strand, 6242717 - 6242907
Alignment:
| Q |
42 |
atgatggctttagttttcatggtttctctttactacctggctttggtgcttgtgacattgttgcatcttcacatcaagagtttccttccttccaagatga |
141 |
Q |
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| T |
6242717 |
atgatggctttggttttcgctatttttctttactacctagctttggtgcttgtgacaatgttacagcttcacatcaatagtttccttccatacatgatgg |
6242816 |
T |
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| Q |
142 |
tcattcttttacttggaagtgttgtttcaattttagctttaatggttatttcgccgacaattgcttggatttattcgggtttgttgatcttcatctctgc |
241 |
Q |
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| T |
6242817 |
taattcttttacttggaagtgttatttcaattttagc----------atttcgccgacaattgcttggatttatttgggtttgtggatcttaatctttgc |
6242906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 43 - 232
Target Start/End: Complemental strand, 6346556 - 6346367
Alignment:
| Q |
43 |
tgatggctttagttttcatggtttctctttactacctggctttggtgcttgtgacattgttgcatcttcacatcaagagtttccttccttccaagatgat |
142 |
Q |
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|||||||||| |||||||||||| ||||||||||| ||| |||||||||||||||| || | || ||||||||||||| |||||||| | || |||| | |
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| T |
6346556 |
tgatggctttggttttcatggttgctctttactacttggttttggtgcttgtgacaatgctacagcttcacatcaagaacttccttccattcatgatggt |
6346457 |
T |
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| Q |
143 |
cattcttttacttggaagtgttgtttcaattttagctttaatggttatttcgccgacaattgcttggatttattcgggtttgttgatctt |
232 |
Q |
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||| ||||||||||||||||||||||| || ||||||| ||| | ||||| || |||||||||||||||| || ||| |||| |||||| |
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| T |
6346456 |
tattgttttacttggaagtgttgtttcagttctagctttgatgatgatttctcctacaattgcttggatttttttgggcttgtggatctt |
6346367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 34 - 213
Target Start/End: Original strand, 6219545 - 6219724
Alignment:
| Q |
34 |
acccaattatgatggctttagttttcatggtttctctttactacctggctttggtgcttgtgacattgttgcatcttcacatcaagagtttccttccttc |
133 |
Q |
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|||| ||||||||| | ||||||||||||||| |||||| || | ||| |||||||||| | ||| |||| || ||||||||||||| |||||||| | |
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| T |
6219545 |
acccgattatgatgacattagttttcatggttgctcttttcttcatggttttggtgcttattacaatgttacagattcacatcaagagcttccttccatt |
6219644 |
T |
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| Q |
134 |
caagatgatcattcttttacttggaagtgttgtttcaattttagctttaatggttatttcgccgacaattgcttggattt |
213 |
Q |
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| T |
6219645 |
catgatggttattgttttacttggaagtgttgtttcagttctagctttgatgatgatttctcctacaattgcttggattt |
6219724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2079 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: scaffold2079
Description:
Target: scaffold2079; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 103 - 223
Target Start/End: Original strand, 986 - 1106
Alignment:
| Q |
103 |
tgcatcttcacatcaagagtttccttccttccaagatgatcattcttttacttggaagtgttgtttcaattttagctttaatggttatttcgccgacaat |
202 |
Q |
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|||| ||||||||||| |||||||| || | || |||| | ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
986 |
tgcagcttcacatcaatagtttcctcccattcatgatggtaattcttttacttggaagtgttgtttcaattttagcattgatggttatttcgccgacaat |
1085 |
T |
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| Q |
203 |
tgcttggatttattcgggttt |
223 |
Q |
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|||||||||||||| |||||| |
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| T |
1086 |
tgcttggatttatttgggttt |
1106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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