View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9453_high_9 (Length: 279)
Name: NF9453_high_9
Description: NF9453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9453_high_9 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 43257588 - 43257866
Alignment:
| Q |
1 |
ccttcaaatcaagcttgttgctggatgtggagataaattctttggacggaaagggatgctatcacatcccgatgaaagagcttttcctgactcaggaaag |
100 |
Q |
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| T |
43257588 |
ccttcaaatcaagcttgttgctggatgtggagataaattctttggacggaaagggatgctatcacatcccgatgaaagagcttttcctgactcaggaaag |
43257687 |
T |
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| Q |
101 |
gtagattctgttggagaagtaacaaatgagtttaaaagtaatgacaaagaaaaagaagtacaacttggagttgaagagaagggaaacaagatgcagaaaa |
200 |
Q |
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| T |
43257688 |
gtagattctgttggagaagtaacaaatgagtttaaaagtaatgacaaagaaaaagaagtacaacttggagttgaagagaagggaaacaagatgcagaaaa |
43257787 |
T |
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| Q |
201 |
atgaggtggagagtgccgcaaatactggtgtaatagatgaggtccaaagctttcatgatgaaaatggtgttccgcctga |
279 |
Q |
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| T |
43257788 |
atgaggtggagagtgctgcaaatactggtgtaatagatgaggtccaaagctttcatgatgaaaatggtgttccgcctga |
43257866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 27 - 165
Target Start/End: Original strand, 43255472 - 43255610
Alignment:
| Q |
27 |
gtggagataaattctttggacggaaagggatgctatcacatcccgatgaaagagcttttcctgactcaggaaaggtagattctgttggagaagtaacaaa |
126 |
Q |
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| T |
43255472 |
gtggagctaaattttttggacggaaagggataatgtcgcaatcagatgaaagagcttttcctgactcaggaaaggtagattctgttggagaagtagcaga |
43255571 |
T |
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| Q |
127 |
tgagtttaaaagtaatgacaaagaaaaagaagtacaact |
165 |
Q |
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| T |
43255572 |
tgagtttaagagtgatgacaacgaaaaagaagtacaact |
43255610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 242 - 279
Target Start/End: Original strand, 43255780 - 43255817
Alignment:
| Q |
242 |
gtccaaagctttcatgatgaaaatggtgttccgcctga |
279 |
Q |
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| T |
43255780 |
gtccaaagctttcgtgatgaaaatggtgttccgcctga |
43255817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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