View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9453_low_10 (Length: 458)
Name: NF9453_low_10
Description: NF9453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9453_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 16 - 450
Target Start/End: Original strand, 46848403 - 46848837
Alignment:
| Q |
16 |
agaacaaccaccattgtactcttatttggcaaaacattcgcctcctgcatctcataaaaacacgcgatagcttcttcaaaacgaccactctgaacatacc |
115 |
Q |
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| T |
46848403 |
agaacaaccaccattgtactcttatttggcaaaacattcgcctcctgcatctcataaaaacacacgatagcttcttcaaaacgaccactctgaacatacc |
46848502 |
T |
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| Q |
116 |
cagaaatcatggcattccacgaaaccacatctttaaccggaatttcatcaaaaagccgtctagcatcatctaaacaaccctgcgaaacatacccagtaat |
215 |
Q |
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| T |
46848503 |
cagaaatcatggcattccacgaaaccacatctttaaccggaatttcatcaaaaagccgtctagcatcatctaaacaaccctgcgaaacatacccagtaat |
46848602 |
T |
|
| Q |
216 |
aagagccgtaaaagaaaccgcgtctctcagagaacttttatcaaacaccaaccgtgcaaagtccatttcaccaacagaagcatacatatgaataaccgaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46848603 |
aagagccgtaaaagaaaccgcgtctctcagagaacttttatcaaacaccaaccgtgcaaagtccatttcaccaacagaagcatacatatgaataaccgaa |
46848702 |
T |
|
| Q |
316 |
gtatgaacatgtggattaaaatgaagtgccaacttcaaagcatgagcatgaagctgtttaccttcatgggtcgccttcgcttttgtgcaagacttaaaca |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46848703 |
gtatgaacatgtggattaaaatgaagtgccaacttcaaagcatgagcatgaagctgtttaccttcatgggtcgccttcgcttttgtgcaagacttaaaca |
46848802 |
T |
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| Q |
416 |
aaaagggaaaggtatgagaattcggttgaacacca |
450 |
Q |
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| T |
46848803 |
aaaagggaaaggtatgagaattcggttgaacacca |
46848837 |
T |
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