View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9453_low_11 (Length: 429)
Name: NF9453_low_11
Description: NF9453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9453_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 23 - 425
Target Start/End: Complemental strand, 6226965 - 6226562
Alignment:
| Q |
23 |
gaactgacctgtttatcatggctcatgtgtgcatgtgatgatccagtgtgtaggcatgactatcagaaggacttgtaccaggtctaacaacaaatgccaa |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6226965 |
gaactgacctgtttatcatggctcatgtgtgcatgtgatgatccagtgtgtaggcatgactatcagaaggacttgtaccaggtctaacaacaaatgccaa |
6226866 |
T |
|
| Q |
123 |
tacaaaacctnnnnnnntgagcaagaacataagtctaggtagcgaagtaccagaaatattcatcgaaactactaaaaactatctttgggagtcaaatagc |
222 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6226865 |
tacaaaacctaacaaaatgagcaagaacataagtctaggtagcgaagtaccagaaatattcatcgaaactactaaaaactatctttgggagtcaaatagc |
6226766 |
T |
|
| Q |
223 |
atttctaaatacatgattatactcacaagataacacattgattttatcattctgcatttgtgaaaaagttgtgaaagctgctagcccaaacacgccaaaa |
322 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
6226765 |
atttctaaatacatgattatactcacaagataacacattgattttatcattctgcatttgtgaaaaagttgtgaaagctgctagcccaaacacaccaaaa |
6226666 |
T |
|
| Q |
323 |
cggta-nnnnnnncccaactaacttatatagtatgcgcattttgctaacatttataccaggacaaattagctctcaaacagtcatgactcgagaataatc |
421 |
Q |
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| T |
6226665 |
cagtatttttttgcctaactaacttatatagtatgcgcattttgctaacatttataccaggacaaattagctctcaaacagtcatgactcgagaataagc |
6226566 |
T |
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| Q |
422 |
tacc |
425 |
Q |
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|||| |
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| T |
6226565 |
tacc |
6226562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 128; Significance: 5e-66; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 35 - 231
Target Start/End: Complemental strand, 37060278 - 37060082
Alignment:
| Q |
35 |
ttatcatggctcatgtgtgcatgtgatgatccagtgtgtaggcatgactatcagaaggacttgtaccaggtctaacaacaaatgccaatacaaaacctnn |
134 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||| |
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| T |
37060278 |
ttatcatggctcatgtgtgcatgtgatgatccagtgtgtaggcatgactatcagaaggacttgtacccggcctaacaacaaataccaatacaaaaccaaa |
37060179 |
T |
|
| Q |
135 |
nnnnntgagcaagaacataagtctaggtagcgaagtaccagaaatattcatcgaaactactaaaaactatctttgggagtcaaatagcatttctaaa |
231 |
Q |
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|||| ||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||| | ||||||||||||||| |||||||||| |
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| T |
37060178 |
caaaatgagtaagaacataagtctaggtagcaaagtatcagaaatattcatcgaagttactaaaaactgtttttgggagtcaaataccatttctaaa |
37060082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 232 - 411
Target Start/End: Complemental strand, 37059281 - 37059095
Alignment:
| Q |
232 |
tacatgattatactcacaagataacacattgattttatcattctgcatttgtgaaaaagt--tgtgaaagctgctagcccaaacacgcc--aaaacggta |
327 |
Q |
| |
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|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||| ||| |
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| T |
37059281 |
tacaggattatgttcacaagataacacattgattttatcattctgcatttgtgaaaaaaaaatgtgaaagctgctagcccaaacacacataaaaacagta |
37059182 |
T |
|
| Q |
328 |
nnnnnnn---cccaactaacttatatagtatgcgcattttgctaacatttataccaggacaaattagctctcaaacagtcatgactc |
411 |
Q |
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|| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
37059181 |
ttttttttttcctaactaatttatatagtatgcacattttgctaacatttataccaggacaaattagatctcaaagagtcatgactc |
37059095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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