View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9453_low_12 (Length: 417)
Name: NF9453_low_12
Description: NF9453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9453_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 5 - 402
Target Start/End: Original strand, 38096501 - 38096886
Alignment:
| Q |
5 |
agtttggtggtaaaggtcaagaaaagtttaggccaactgtaagttgataaacacgacagttaactattgaatttgatatcttattttaattacattatta |
104 |
Q |
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| T |
38096501 |
agtttggtggtaaaggtcaagaaaagtttaggccaactgtaagttgat------------taactattgaatttgatatcttattttaattacattatta |
38096588 |
T |
|
| Q |
105 |
aaatatttaagtataacattaattacttgatcatatacatatacaggctcttcgattccttgattgtcaagctctaacacttagcaacatgaatcacatg |
204 |
Q |
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||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
38096589 |
aaatatttaagtataacataaattacttgataatatgcatatacaggctcttcgattccttgattgtcaagctctaacacttagcaacttgaatcacatg |
38096688 |
T |
|
| Q |
205 |
aatagtccgaagaatcatataagtgtagattcatgcaaaaacgcttccatctccaatctttatataactgcaccaccaactagtccaaacacggatggaa |
304 |
Q |
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| T |
38096689 |
aatagtccgaagaatcatataagtgtagattcatgcaaaaacgcttccatcttcaatattcatataactgcaccaccaaccagtccaaatacagatggaa |
38096788 |
T |
|
| Q |
305 |
ttgatatctcacaatcaaccaacatcgccattatgaattcaaccatcgaaactggtcattataatacataacctcaactctacatttcgtgatgatca |
402 |
Q |
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| T |
38096789 |
ttgatatctcacagtcaaccaacatcgccattatgaattcaaccatcgaaactggtcattataatacataacctcaactctacatttcgtgatgatca |
38096886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 34 - 374
Target Start/End: Original strand, 21550919 - 21551255
Alignment:
| Q |
34 |
aggccaactgtaagttgataaacacgacagttaactattgaatttgatatcttattttaattacattattaaaatatttaagtataacattaattacttg |
133 |
Q |
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| T |
21550919 |
aggccaactgtaagttgaataacatgatagccaattatttaatttgatatattattgaaactac---attgaaata-ttaagtataaaataaattatttg |
21551014 |
T |
|
| Q |
134 |
atcatatacatatacaggctcttcgattccttgattgtcaagctctaacacttagcaacatgaatcacatgaatagtccgaagaatcatataagtgtaga |
233 |
Q |
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|| |||| | ||| |||||||||| ||| |||| ||||||| ||||| ||||| || ||| ||||| ||||||||| | ||||||||||||| |||| |
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| T |
21551015 |
ataatatgcctatgcaggctcttcaatttcttgggtgtcaagatctaaaacttaatgacttgactcacaggaatagtccaaggaatcatataagtataga |
21551114 |
T |
|
| Q |
234 |
ttcatgcaaaaacgcttccatctccaatctttatataactgcaccaccaactagtccaaacacggatggaattgatatctcacaatcaaccaacatcgcc |
333 |
Q |
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| T |
21551115 |
tacttgcaaaggagctttcatttccaatcttcatataattgcagcaccaacaagtccaaacaccgatggaattgatatctcacaatcatccaatgtcttc |
21551214 |
T |
|
| Q |
334 |
attatgaattcaaccatcgaaactggtcattataatacata |
374 |
Q |
| |
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|||| ||| ||| ||| | ||||||||| ||||||||||| |
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| T |
21551215 |
attacgaactcattcattggaactggtcaatataatacata |
21551255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 177 - 402
Target Start/End: Complemental strand, 19057423 - 19057198
Alignment:
| Q |
177 |
tctaacacttagcaacatgaatcacatgaatagtccgaagaatcatataagtgtagattcatgcaaaaacgcttccatctccaatctttatataactgca |
276 |
Q |
| |
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||||||| | |||||| |||||||||| || || || | |||||||||||| ||||||||||||||||||||||||||||||||||| | |||| ||| |
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| T |
19057423 |
tctaacaataagcaacttgaatcacattaacagcccaagaaatcatataagtatagattcatgcaaaaacgcttccatctccaatcttcagataattgcg |
19057324 |
T |
|
| Q |
277 |
ccaccaactagtccaaacacggatggaattgatatctcacaatcaaccaacatcgccattatgaattcaaccatcgaaactggtcattataatacataac |
376 |
Q |
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|| || |||||||||||| ||||| ||||||||| || ||| |||||||| ||||| |||| | ||||| |||||||| | |||||||||||| |
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| T |
19057323 |
cccgaaaatagtccaaacactgatgggattgatatcgcatcttcatccaacatcatcattaataatttatccatcaaaactggttagtataatacataaa |
19057224 |
T |
|
| Q |
377 |
ctcaactctacatttcgtgatgatca |
402 |
Q |
| |
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||||||| || ||||| ||||||||| |
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| T |
19057223 |
ctcaactttagatttcttgatgatca |
19057198 |
T |
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