View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9453_low_13 (Length: 396)
Name: NF9453_low_13
Description: NF9453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9453_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 17 - 374
Target Start/End: Complemental strand, 12164038 - 12163683
Alignment:
| Q |
17 |
agtctttgggtgcagactctgcacatataagaaggatggaagccaacagcatggctaggaaaagaaaagcctttgaattcatttttataaagtactctct |
116 |
Q |
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| T |
12164038 |
agtctttgggtgcagactctgcacatataagaaggatggtagccaacagcatggctaggaaaagtaaagcctttgaattcatttttataaagtactctct |
12163939 |
T |
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| Q |
117 |
atgaaacttatatgtatctaggaaaagtattgattgatgaaaatgaagtgaccaaatgtttggtatttataggcaaggtgaggcagaaatatagaataag |
216 |
Q |
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| T |
12163938 |
atgaaacttatatgtatctaggaaaagtattgattgatgaaaatgaagtgaccaaatgttgggtatttataggcaaggtgaggcagaa--atagaataat |
12163841 |
T |
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| Q |
217 |
agcattaaattgttttgttgagannnnnnnagttcattcttatctttatttctgagttactattattagtaagtagatcagcaacatacattcaaattgt |
316 |
Q |
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| T |
12163840 |
agcattaaattgttttgttcagatatttttagttcattcttatctttatttctgagttactattattagtaagtggatcagcaacatacattcaaattgt |
12163741 |
T |
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| Q |
317 |
atgaacagaattttgttttgttttgaggattgtatgaaaggaatatagctggtctcat |
374 |
Q |
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| T |
12163740 |
atgaagagaattttgttttgttttgaggattgtatgaaaggaatatagctggtctcat |
12163683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 17 - 126
Target Start/End: Complemental strand, 12149554 - 12149445
Alignment:
| Q |
17 |
agtctttgggtgcagactctgcacatataagaaggatggaagccaacagcatggctaggaaaagaaaagcctttgaattcatttttataaagtactctct |
116 |
Q |
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| T |
12149554 |
agtctttgggtgcagactctgcacaaatgagaaggatggaagccaacaacatggctagaaaaagtaacgccttggaattcattttcaagaagtactcact |
12149455 |
T |
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| Q |
117 |
atgaaactta |
126 |
Q |
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| T |
12149454 |
ttgaaactta |
12149445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 12146255 - 12146340
Alignment:
| Q |
17 |
agtctttgggtgcagactctgcacatataagaaggatggaagccaacagcatggctaggaaaagaaaagcctttgaattcattttt |
102 |
Q |
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| T |
12146255 |
agtctttgggtgcagtctcagcagaactgagaaggatggaagccaacaacatagctagaaaaagtaaagccttggaattcattttt |
12146340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 253 - 355
Target Start/End: Complemental strand, 12149350 - 12149252
Alignment:
| Q |
253 |
ttcttatctttatttctgagttactattattagtaagtagatcagcaacatacattcaaattgtatgaacagaattttgttttgttttgaggattgtatg |
352 |
Q |
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| T |
12149350 |
ttcttatcttttttcccaagttactattattagtaagtggatcggcaacat----tcagattgtatgaaaagagtgttgttttgttttgaggattgtgtg |
12149255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 144 - 207
Target Start/End: Complemental strand, 12175301 - 12175238
Alignment:
| Q |
144 |
tattgattgatgaaaatgaagtgaccaaatgtttggtatttataggcaaggtgaggcagaaata |
207 |
Q |
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| T |
12175301 |
tattgatcgatgaaaatgaagtgactgaaagttatgtatttataggcaagatgaggaagaaata |
12175238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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