View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9453_low_16 (Length: 366)
Name: NF9453_low_16
Description: NF9453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9453_low_16 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 16 - 366
Target Start/End: Original strand, 34472647 - 34472997
Alignment:
| Q |
16 |
caaaaattaacggttataaaaccttcaagattaagaactcccctaggaaattacggggttgtaatcagagaagagagttatatatgaatcaagaattggt |
115 |
Q |
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| T |
34472647 |
caaaaattaacagttataaaaccttcaagattaagaactcccctaggaaattagggggttgtaatcagagaagagagttatatgtgaatcaagaattggt |
34472746 |
T |
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| Q |
116 |
tctattaactgaacaacaaaagatagaggatttgaaaatcctcatcatcttcctctagaaatatttatcaagttatttatattttgacaattctgcctgt |
215 |
Q |
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| T |
34472747 |
tctatttactgaacaacaaaagatagaggatttgaaagtcctcatcatcttcctctagaaatatttatcaagttatttatattttgacaattctgcctat |
34472846 |
T |
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| Q |
216 |
gattgttaaaccaacttatatgtccagtgcatttccgcctttatatttcatccttattgataacattgttgtctagtagaaattaaaacaatccttgagc |
315 |
Q |
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| T |
34472847 |
gattgttaaaccaacttatatgtccagtgcatttccccctttatatttcatccttattgataacattgttgtctagtagaaattaaaacaatccttgagc |
34472946 |
T |
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| Q |
316 |
agacgaattattttattactctaacgtaattttagtgcacttgctaaaagt |
366 |
Q |
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| T |
34472947 |
agacaaattattttattactctaacgcaattttagtgcacttgctaaaagt |
34472997 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 207
Target Start/End: Original strand, 26391069 - 26391137
Alignment:
| Q |
138 |
atagaggatttgaaaatcctcatcatcttcctctagaaatatttatcaagttatttatattttgacaatt |
207 |
Q |
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| T |
26391069 |
atagaggatttgaatctc-tgatcattttccactagaaatatctaccaagttatttatattttcacaatt |
26391137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 207
Target Start/End: Complemental strand, 21023583 - 21023515
Alignment:
| Q |
138 |
atagaggatttgaaaatcctcatcatcttcctctagaaatatttatcaagttatttatattttgacaatt |
207 |
Q |
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| T |
21023583 |
atagaggatttgaata-catgatcattttccactagaaatatctaccaagttatttatattttaacaatt |
21023515 |
T |
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