View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9453_low_17 (Length: 364)
Name: NF9453_low_17
Description: NF9453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9453_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 353
Target Start/End: Complemental strand, 29143803 - 29143469
Alignment:
| Q |
18 |
ggtgggaataggggttgtagaattaccaagtttacgttaaagacacaacaaaataagatgatcttttatgggatataacaaacatttcttttgctttaaa |
117 |
Q |
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| T |
29143803 |
ggtgggaatagagattgtagaattaccaagtttacgttaaagacacaacaaaataagatgatcttttatgggatataacaaacatttcttttgctttaaa |
29143704 |
T |
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| Q |
118 |
taatgaaaatgatatatgatgagttacacaaagttaaactatcacggttattctaaaagtttagtggtgaattgttaattaacctgtatannnnnnncta |
217 |
Q |
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| T |
29143703 |
taatgaaaatgatatatgatgag-tacacaaagttaaactatcacggttattctaaaagtttagtggtgaattgttaattaacctgtatatttttttcta |
29143605 |
T |
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| Q |
218 |
gtggtaaaatagctatggtattgtttgtgccaaaaaagagtcatggtattgattctttccaatnnnnnnnttataagagccgagaatttgtcaacatagt |
317 |
Q |
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| T |
29143604 |
gtggtaaaatagccatggtattgtttgtgccaaaaaaaagtcatggtattgattctttccaataaaaaaattataagagccgagaatttgtcaacatagt |
29143505 |
T |
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| Q |
318 |
taaaccaaacaattggtttcaagtgcttaatgaact |
353 |
Q |
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| T |
29143504 |
taaaccaagcaattggtttcaagtgcttaatgaact |
29143469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 357
Target Start/End: Original strand, 18774341 - 18774381
Alignment:
| Q |
317 |
ttaaaccaaacaattggtttcaagtgcttaatgaactccat |
357 |
Q |
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| T |
18774341 |
ttaaaccaaacaattgtgttcaagtgattaatgaactccat |
18774381 |
T |
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