View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9453_low_19 (Length: 349)
Name: NF9453_low_19
Description: NF9453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9453_low_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 22 - 344
Target Start/End: Original strand, 325920 - 326263
Alignment:
| Q |
22 |
aaggaatatggaagaaacatccaaaaattaaagcatttgattttgattcatctgtttttcttttc---------------------aaccagcaacaaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
325920 |
aaggaatatggaagaaacatccaaaaattaaagcatttgattttgatgaatctgtttttcttttctggctttcttttgaaaagctaaaccagcaacaaca |
326019 |
T |
|
| Q |
101 |
aaacaacatgagaaattgtgtttgttttctcagcaccgtcaccaccaagattcttcttcttgttgtctactactactacttggacggagcctttgttgtt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
326020 |
aaacaacatgagaaattgtgtttgttttctcagcaccatcaccaccaagattcttcttcttgttgtctactactactacttggacggagcctttgttgtt |
326119 |
T |
|
| Q |
201 |
cttcttatacattactctttcgaacaacaagaatgaaagaagaagcagctccttcggtttttcgattgtgtttagcggtggtttgttgcttttccttctt |
300 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
326120 |
cttcttatatgttactctttcgaacaacaacaatgaaagaagaagcagctccttccatttttcgactgcgtttagcggtggtttgttgcttttccttctt |
326219 |
T |
|
| Q |
301 |
cgctaactcctccgctcccgccgttgcgtttgttctctgcttct |
344 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
326220 |
cgctaactcctccgctccctccgttgcgtttgttctctgtttct |
326263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 105 - 174
Target Start/End: Original strand, 1096083 - 1096152
Alignment:
| Q |
105 |
aacatgagaaattgtgtttgttttctcagcaccgtcaccaccaagattcttcttcttgttgtctactact |
174 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1096083 |
aacatgagaaattgtgtttgttttctcagcaccgtcaccaccaagattcttcttcttcttgtctactact |
1096152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 106 - 200
Target Start/End: Complemental strand, 1096351 - 1096259
Alignment:
| Q |
106 |
acatgagaaattgtgtttgttttctcagcaccgtcaccaccaagattcttcttcttgttgtctactactactacttggac-ggagcctttgttgtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||| ||||||||||||||| |
|
|
| T |
1096351 |
acatgagaaattgtgtttgttttctcagcaccgtcaccaccaagattcttcttcttcttgtctactacttcta---ggacgggagcctttgttgtt |
1096259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 104 - 206
Target Start/End: Complemental strand, 326623 - 326523
Alignment:
| Q |
104 |
caacatgagaaattgtgtttgttttctcagcaccgtcaccaccaagattcttcttcttgttgtctactactactacttggac-ggagcctttgttgttct |
202 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||| ||||||| || || |||||||| |||||||||||| ||||| |||| ||||||||||||||||| |
|
|
| T |
326623 |
caacatgagaaattgtgtctattttctcagcaccatcaccactaacat--ttcttcttcttgtctactact-ctactaggacaggagcctttgttgttct |
326527 |
T |
|
| Q |
203 |
tctt |
206 |
Q |
| |
|
|||| |
|
|
| T |
326526 |
tctt |
326523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 270 - 337
Target Start/End: Complemental strand, 326496 - 326429
Alignment:
| Q |
270 |
gtttagcggtggtttgttgcttttccttcttcgctaactcctccgctcccgccgttgcgtttgttctc |
337 |
Q |
| |
|
||||||||||||||||||| | |||||| ||| ||||||||||||||| ||||| ||| ||||||||| |
|
|
| T |
326496 |
gtttagcggtggtttgttgttcttcctttttcactaactcctccgctcacgccgctgcatttgttctc |
326429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 193 - 312
Target Start/End: Original strand, 498080 - 498203
Alignment:
| Q |
193 |
ttgttgttcttcttatacatt-actctttcgaacaacaagaatgaaagaagaag---cagctccttcggtttttcgattgtgtttagcggtggtttgttg |
288 |
Q |
| |
|
|||||||| |||||||| || ||||||||||||||||| || | ||||||||| || || ||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
498080 |
ttgttgttattcttatatgttgactctttcgaacaacaacaacggaagaagaagaaacaacttcttcggtttttcggttgcgtttagcggtggtttgttg |
498179 |
T |
|
| Q |
289 |
cttttccttcttcgctaactcctc |
312 |
Q |
| |
|
| ||||||||||||||||||||| |
|
|
| T |
498180 |
ttcttccttcttcgctaactcctc |
498203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 129 - 339
Target Start/End: Complemental strand, 498903 - 498689
Alignment:
| Q |
129 |
ctcagcaccgtcaccaccaagattcttcttcttgttgtctactactactacttggacgga-gcctttgttgttctt---cttatacattactctttcgaa |
224 |
Q |
| |
|
|||||||||||||| || ||||||||||||||| |||| ||||||||||| ||||| | |||||||||||| || |||||| | ||||||||||| |
|
|
| T |
498903 |
ctcagcaccgtcacaacaaagattcttcttcttcttgtttactactacta---ggacgaaagcctttgttgttgttattcttatatttgactctttcgaa |
498807 |
T |
|
| Q |
225 |
caacaagaatgaaagaagaagcagc---tccttcggtttttcgattgtgtttagcggtggtttgttgcttttccttcttcgctaactcctccgctcccgc |
321 |
Q |
| |
|
|| ||| | | ||||||||| ||| | ||||||||||| ||| |||||||||| ||||||| | ||||||||| |||||||||||||| | ||| |
|
|
| T |
498806 |
cagcaacagcggaagaagaagaagcaacttcttcggttttttagttgcttttagcggtgatttgttgttcttccttctttgctaactcctccgcccacgc |
498707 |
T |
|
| Q |
322 |
cgttgcgtttgttctctg |
339 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
498706 |
cgccgcgtttgttctctg |
498689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 129 - 336
Target Start/End: Original strand, 498211 - 498423
Alignment:
| Q |
129 |
ctcagcaccgtcaccaccaagattcttcttcttgttgtctactactactacttggacgg-agcctttgttgttcttctt---atacatt-actctttcga |
223 |
Q |
| |
|
||||||||||||||||| ||||| ||||| ||||||| ||||||||||| |||||| ||||||||||||| || || ||| || |||||||||| |
|
|
| T |
498211 |
ctcagcaccgtcaccacaaagatgtttcttgttgttgtttactactacta---ggacgggagcctttgttgttgttattcgtatatgttgactctttcga |
498307 |
T |
|
| Q |
224 |
acaacaagaatgaaaga---agaagcagctccttcggtttttcgattgtgtttagcggtggtttgttgcttttccttcttcgctaactcctccgctcccg |
320 |
Q |
| |
|
||| || || | |||| |||||||| | |||| |||||||| ||| ||||||||||||||||| | |||||||||||||||| ||||| | | || |
|
|
| T |
498308 |
acagcaccaacggaagaagaagaagcagtttcttcagtttttcggttgctattagcggtggtttgttgttcttccttcttcgctaacacctcctcccacg |
498407 |
T |
|
| Q |
321 |
ccgttgcgtttgttct |
336 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
498408 |
tcgtcgcgtttgttct |
498423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 102 - 161
Target Start/End: Complemental strand, 499090 - 499031
Alignment:
| Q |
102 |
aacaacatgagaaattgtgtttgttttctcagcaccgtcaccaccaagattcttcttctt |
161 |
Q |
| |
|
||||| ||||||||||||| |||| |||||| |||||||||||| ||||||||||||||| |
|
|
| T |
499090 |
aacaaaatgagaaattgtgattgtattctcaacaccgtcaccacaaagattcttcttctt |
499031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 311
Target Start/End: Complemental strand, 498967 - 498912
Alignment:
| Q |
256 |
ggtttttcgattgtgtttagcggtggtttgttgcttttccttcttcgctaactcct |
311 |
Q |
| |
|
||||||| | ||| ||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
498967 |
ggttttttggttgcgtttagcggtggtttgttgttattccttcttcgctaactcct |
498912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University