View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9453_low_20 (Length: 348)
Name: NF9453_low_20
Description: NF9453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9453_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 34473023 - 34473357
Alignment:
| Q |
1 |
aagattaaattaataaatttaaaccaatgacattttaaggataaaaagcaattacatatcatcgaaataagtcactgcaaacatgcaacataaacttttg |
100 |
Q |
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| T |
34473023 |
aagattaaattaataaatttaaaccaatgacattttaaggataaaaagcaattacatatcatcgaaataagtcactgcaaacatgcaacataaacttttg |
34473122 |
T |
|
| Q |
101 |
tnnnnnnnnnnnnnnnnnnnnnnnctgaagacagaaactatagagggacaagtttaaagaannnnnnnagaatgtcgtctgaaaatgaaagttgatatat |
200 |
Q |
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| T |
34473123 |
taaaataaaaaataggaataaaaactgaagacagaaactatagagggacaagtttaaagaatttttttagaatgac---tgaaaatgaaagttgatatat |
34473219 |
T |
|
| Q |
201 |
ttaacggatctaaaacatatttaactcttatttttaacaccaaatttattagcttccctacttagtctattttgtgtatgtgtctatttcatgaatttca |
300 |
Q |
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| T |
34473220 |
ttagcggacctaaaacatattcaacccttatttttaacaccaaatttattagcttccctacttagtctattttgtgtatgtgtctatttcatgaatttca |
34473319 |
T |
|
| Q |
301 |
attactaggctaatttgagtttcccttttgttcctttg |
338 |
Q |
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| T |
34473320 |
atttctaggctaatttgagtttcccttttgttcctttg |
34473357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 26241002 - 26240953
Alignment:
| Q |
188 |
aaagttgatatatttaacgg-atctaaaacatatttaactcttattttta |
236 |
Q |
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| T |
26241002 |
aaagttgatatatttataggtatcaaaaacatatttaactcttattttta |
26240953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 538942 - 538990
Alignment:
| Q |
188 |
aaagttgatatatttaacggatctaaaacatatttaactcttattttta |
236 |
Q |
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||||||| |||||||| ||||| |||||||||||||| |||||||||| |
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| T |
538942 |
aaagttggtatatttataggatcaaaaacatatttaacccttattttta |
538990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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