View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9453_low_24 (Length: 304)
Name: NF9453_low_24
Description: NF9453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9453_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 44069800 - 44069513
Alignment:
| Q |
1 |
tcaaccctagattcttcttcttccttccatgatattgcacttaaggttaccttggaccaagccattgaagcacacaaacttgtatcaaccatggaattaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
44069800 |
tcaaccctagattcttcttcttccttccatgatattgcacttaaggttaccttggaccaagccattgaagctcacaaacttgtatcaaccatggaattaa |
44069701 |
T |
|
| Q |
101 |
ataatttcaaagacaagcatgccaaatcagcatgggaagattgcttagagctttatgaggatacaatatatcaactcaaacgctcaataaactcaaacaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44069700 |
ataatttcaaagacaagcatgccaaatcagcatgggaggattgtttagagctttatgaggatacaatatatcaactcaaacgctcaataaactcaaacaa |
44069601 |
T |
|
| Q |
201 |
cataaatgacaaattaacttggcaaagtgcttccattaccaatcatcaaacttgccaaaatggtttcattgatttcaaccttccatct |
288 |
Q |
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| T |
44069600 |
cctaaatgacaaattaacttggcaaagtgcttccattaccaatcatcaaacttgccaaaatggtttcattgatttcaaccttccatct |
44069513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 44095049 - 44094762
Alignment:
| Q |
1 |
tcaaccctagattcttcttcttccttccatgatattgcacttaaggttaccttggaccaagccattgaagcacacaaacttgtatcaaccatggaattaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44095049 |
tcaaccctagattcttcttcttccttccatgatattgtacttaaggttaccttggaccaagccattgaagcacacaaacttgtatcaaccatggaattaa |
44094950 |
T |
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| Q |
101 |
ataatttcaaagacaagcatgccaaatcagcatgggaagattgcttagagctttatgaggatacaatatatcaactcaaacgctcaataaactcaaacaa |
200 |
Q |
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| T |
44094949 |
ataatttcaaagacaagcatgccaaatcagcatgggaggattgtttagagctttatgaggatacaatatatcaactcaaacgctcaataaactcaaacaa |
44094850 |
T |
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| Q |
201 |
cataaatgacaaattaacttggcaaagtgcttccattaccaatcatcaaacttgccaaaatggtttcattgatttcaaccttccatct |
288 |
Q |
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| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44094849 |
cctaaatgataaattaacttggcaaagtgcttccattaccaatcatcaaacttgccaaaatggtttcattgatttcaaccttccatct |
44094762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 44085305 - 44085592
Alignment:
| Q |
1 |
tcaaccctagattcttcttcttccttccatgatattgcacttaaggttaccttggaccaagccattgaagcacacaaacttgtatcaaccatggaattaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
44085305 |
tcaaccctagattcttcttcttccttccatgatattgtacttaaggttaccttggaccaagccattgaagctcacaaacttgtatcaaccatggaattaa |
44085404 |
T |
|
| Q |
101 |
ataatttcaaagacaagcatgccaaatcagcatgggaagattgcttagagctttatgaggatacaatatatcaactcaaacgctcaataaactcaaacaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44085405 |
ataatttcaaagacaagcatgccaaatcagcatgggaggattgtttagagctttatgaggatacaatatatcaactcaaacgctcaataaactcaaacaa |
44085504 |
T |
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| Q |
201 |
cataaatgacaaattaacttggcaaagtgcttccattaccaatcatcaaacttgccaaaatggtttcattgatttcaaccttccatct |
288 |
Q |
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| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44085505 |
cctaaatgataaattaacttggcaaagtgcttccattaccaatcatcaaacttgccaaaatggtttcattgatttcaaccttccatct |
44085592 |
T |
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