View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9453_low_26 (Length: 283)
Name: NF9453_low_26
Description: NF9453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9453_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 28110261 - 28109982
Alignment:
| Q |
1 |
agttttttctattaattttaaatgtgagattgtannnnnnngtatagaccaatatgcaggacagtttcagatgcagttcatgtgcttgatgtaattgttg |
100 |
Q |
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| T |
28110261 |
agttttttctattaattttaaatgtgagattgtatttttttgtatagaccaatatgcaggacagtttcagatgcagttcatgtgcttgatgtaattgttg |
28110162 |
T |
|
| Q |
101 |
gatttgacccaagagattatgaagctacaaaatcagcagctaagtttataccttcaggtggttataagcaattcctcaataaacaagggctcaatggaaa |
200 |
Q |
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| T |
28110161 |
gatttgacccaagagattatgaagctacaaaatcagcagctaagtttataccttcaggtggttataagcaattcctcaataaacaagggctcaatggaaa |
28110062 |
T |
|
| Q |
201 |
gaaaataggtgttttgaggaatccatttttgattccctataaaggatccaatgtcacttccatctttgatgtccatctca |
280 |
Q |
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| T |
28110061 |
gaaaataggtgttttgaggaatccatttttgattccctataaaggatccaatgtcacttccatctttgaggaccatctca |
28109982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 49 - 269
Target Start/End: Complemental strand, 28128709 - 28128489
Alignment:
| Q |
49 |
ccaatatgcaggacagtttcagatgcagttcatgtgcttgatgtaattgttggatttgacccaagagattatgaagctacaaaatcagcagctaagttta |
148 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||| |
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| T |
28128709 |
ccaatttgcaggacagtttcagatgcagttcatgtgcttgatgtaattgttggatttgacacaagagattatgaagctacaaagtcagcagccaagttta |
28128610 |
T |
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| Q |
149 |
taccttcaggtggttataagcaattcctcaataaacaagggctcaatggaaagaaaataggtgttttgaggaatccatttttgattccctataaaggatc |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||| | ||||| |
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| T |
28128609 |
taccttcaggtggttataagcaattcctcaataaacaaggtctcaaaggaaagaaaataggtgttttgaggaatccatttttgattccttatgagggatc |
28128510 |
T |
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| Q |
249 |
caatgtcacttccatctttga |
269 |
Q |
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||| |||| |||||||||||| |
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| T |
28128509 |
caaagtcatttccatctttga |
28128489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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