View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9453_low_3 (Length: 576)
Name: NF9453_low_3
Description: NF9453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9453_low_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 327; Significance: 0; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 32685119 - 32685505
Alignment:
| Q |
1 |
tgaagaaggtacatctaaggcagctgaagttccaaaccagctggagaatgaagcttaagatgaaagaaatccaaaagccgaagttcaaataaaggatgtt |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
32685119 |
tgaagaaggtacatctaaggcagctcaagttccaaaccagcaggagaatgaagcttaagatgaaagat-tccaaaagccgaagttcaaataaaggatgtt |
32685217 |
T |
|
| Q |
101 |
gaaggctgtaaataaaattaggcagttgtgtagggtaagaaaggaaaactgaactatgttctgttttatccttaagttgtgagtgttagatagacacttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
32685218 |
gaaggctgtaaataaaattaggcagttgtgtatagtaagaaaggaaaactgaactatgttctgttttatccttaagttgtgagttttaga----cacttg |
32685313 |
T |
|
| Q |
201 |
ggaagttccaagctcgcaaatcttgtctatgcgtgtctggttattatgtactgattcctatataactattgtatttattctgcactaattcctatataac |
300 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
32685314 |
ggaagtgccaagctcgcaaatcttgtctatgcgtgtctggttattatgtactgattcctatataactattgtatttattctgtactaattcctatataac |
32685413 |
T |
|
| Q |
301 |
tattatcgtgatgtgtctgtaatattctggctttgaatcattctccagaattatagccatcaatctcttatattataaattgcatggttcgg |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
32685414 |
tattatcgtgatgtgtctgtaatattctggctttgaatcattctccagaattatagccatcaatttcttatattataaattgcgtggttcgg |
32685505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 32683409 - 32683672
Alignment:
| Q |
1 |
tgaagaaggtacatctaaggcagctgaagttccaaaccagctggagaatgaagcttaagatgaaagaaatccaaaagccgaagttcaaataaaggatgtt |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
32683409 |
tgaagaaggtacatctaaggcagctcaagttccaaaccagcaggagaatgaagcttaagatgaaagat-tccaaaagccgaagttcaaataaaggatgtt |
32683507 |
T |
|
| Q |
101 |
gaaggctgtaaataaaattaggcagttgtgtagggtaagaaaggaaaactgaactatgttctgttttatccttaagttgtgagtgttagatagacacttg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
32683508 |
gaaggctgtaaataaaattaggcagttgtgtagagtaagaaaggaaaactgaactatgttctgttttatccttaagttgtgagttt----tagacacttg |
32683603 |
T |
|
| Q |
201 |
ggaagttccaagctcgcaaatcttgtctatgcgtgtctggttattatgtactgattcctatataactat |
269 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32683604 |
ggaagtgccaagctcgcaaatcttgtctatgcgtgtctggttattatgtactgattcctatataactat |
32683672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 275 - 434
Target Start/End: Original strand, 32683644 - 32683800
Alignment:
| Q |
275 |
ttattctgcactaattcctatataactattatcgtgatgtgtctgtaatattctggctttgaatcattctccagaattatagccatcaatctcttatatt |
374 |
Q |
| |
|
||||| || ||| |||||||||||||||| ||| ||||||| |||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32683644 |
ttattatgtactgattcctatataactat---cgtaatgtgtcggtaatattatggttttgactcattctccagaattatagccatcaatctcttatatt |
32683740 |
T |
|
| Q |
375 |
ataaattgcatggttcgggggaaaagtaatagtcccaatatattgaatcatccttattgg |
434 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32683741 |
ataaattgcgtggttcgggggaaaagtaatagtcccaatatattgaatcatccttattgg |
32683800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 83 - 252
Target Start/End: Complemental strand, 33010825 - 33010662
Alignment:
| Q |
83 |
gttcaaataaaggatgttgaaggctgtaaataaaattaggcagttgtgtagggtaagaaaggaaaactgaactatgttctgttttatccttaagttgtga |
182 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |||||||||| | |||||||| | ||| |||||||||||| |||||||||| |||||||| |
|
|
| T |
33010825 |
gttcaaataaaggatgttgaagg-tgtaaataaaattaagcagttgtgtggagtaagaaaaggaaattgaactatgttccgttttatcctcaagttgtg- |
33010728 |
T |
|
| Q |
183 |
gtgttagatagacacttgggaagttccaagctcgcaaatctt-gtctatgcgtgtctggttattatgtact |
252 |
Q |
| |
|
||||||| |||||||||| ||||||| ||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
33010727 |
-----agatagatacttgggaagagccaagcttgcaaatcttggtctatgcgtgtttggttattatgtact |
33010662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 33010942 - 33010870
Alignment:
| Q |
1 |
tgaagaaggtacatctaaggcagctgaagttccaaaccagctggagaatgaagcttaagatgaaagaaatcca |
73 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||||| |||| | |||||||||||||||||| ||||| |
|
|
| T |
33010942 |
tgaaaaagctacatctaaggcagctgaagttccaaaccagcaggagtacgaagcttaagatgaaagacatcca |
33010870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 33011205 - 33011259
Alignment:
| Q |
22 |
agctgaagttccaaaccagctggagaatgaagcttaagatgaaagaaatccaaaa |
76 |
Q |
| |
|
|||||||||||||||||||| |||||| |||| |||||| ||||||||||||||| |
|
|
| T |
33011205 |
agctgaagttccaaaccagcaggagaacgaagattaagaagaaagaaatccaaaa |
33011259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 528 - 561
Target Start/End: Original strand, 32683895 - 32683928
Alignment:
| Q |
528 |
cggtcattgcttgctaattcttggatgaagatca |
561 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
32683895 |
cggtcattgcttgctaattcttggatgaagatca |
32683928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 28734759 - 28734811
Alignment:
| Q |
24 |
ctgaagttccaaaccagctggagaatgaagcttaagatgaaagaaatccaaaa |
76 |
Q |
| |
|
|||||||||||||||||| | ||| ||||||||| ||||||| | |||||||| |
|
|
| T |
28734759 |
ctgaagttccaaaccagcagaagattgaagcttatgatgaaaaacatccaaaa |
28734811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 208 - 267
Target Start/End: Complemental strand, 34925199 - 34925139
Alignment:
| Q |
208 |
ccaagctcgcaaatcttg-tctatgcgtgtctggttattatgtactgattcctatataact |
267 |
Q |
| |
|
|||||||| ||||||||| |||||| |||||| |||||| |||||| ||||||||||||| |
|
|
| T |
34925199 |
ccaagctctcaaatcttggtctatgtgtgtcttgttattctgtactatttcctatataact |
34925139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University