View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9453_low_32 (Length: 256)
Name: NF9453_low_32
Description: NF9453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9453_low_32 |
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Alignment Details
Target: chr2 (Bit Score: 129; Significance: 7e-67; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 12 - 245
Target Start/End: Original strand, 3501990 - 3502226
Alignment:
| Q |
12 |
cacagacagaaaccttggaattccgttgacacatgtttcagtagcacaagcaataacattcagttttgcacaccaagcaacagcactgaaag-nnnnnnn |
110 |
Q |
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| T |
3501990 |
cacacacacaaaccttggaattccgttgacacatgtttcagtagcacaagcaataacattcagttttgcacaccaagcaacagcactgaaagaaaagaaa |
3502089 |
T |
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| Q |
111 |
nnnnnnnnncattgaaagtgtggcagcattatgataagcattgaaagaaaacagtggg--gnnnnnnntatgtatacctgaaattgctacgcatgctttc |
208 |
Q |
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| T |
3502090 |
aaaaacaaacattgaaagtgtagcagcattatgataagcattgaaagaaaacagtgggaaaaaaaaaatatgtatacctgaaattgctacgcatgctttc |
3502189 |
T |
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| Q |
209 |
atgaacagtaatcttgtggagtgaagttgaaggtgat |
245 |
Q |
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| T |
3502190 |
atgaacagttatcttgtggagtgaagttgaaggtgat |
3502226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 103
Target Start/End: Original strand, 3513898 - 3513977
Alignment:
| Q |
21 |
aaaccttggaattccgttgacacatgtttcagtagcacaagcaataacattcagttttgcacaccaagcaacagcactgaaag |
103 |
Q |
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| T |
3513898 |
aaaccttggaattc--ttg-cacatgtttcagtagcacaagcaatagcattcagttttgcacaccaagcaacagcactgaaag |
3513977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 177 - 245
Target Start/End: Original strand, 3514081 - 3514149
Alignment:
| Q |
177 |
tatgtatacctgaaattgctacgcatgctttcatgaacagtaatcttgtggagtgaagttgaaggtgat |
245 |
Q |
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| T |
3514081 |
tatgtatacctgaaattgcgacgcatgctttcatgaagattcatcttgtggagtaaagttgaaggtgat |
3514149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 161
Target Start/End: Original strand, 3513995 - 3514036
Alignment:
| Q |
120 |
cattgaaagtgtggcagcattatgataagcattgaaagaaaa |
161 |
Q |
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| T |
3513995 |
cattgaaagtgtagcagcattatgataagcatcgaaagaaaa |
3514036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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