View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9453_low_35 (Length: 250)
Name: NF9453_low_35
Description: NF9453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9453_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 9 - 232
Target Start/End: Original strand, 43257852 - 43258075
Alignment:
| Q |
9 |
tggtgttccgcctgacggtggtgaagaaaacttgtcaacttttacaatagtaaattggcttaaaaagatcagtatttatgaagtcgcgtatggagaagat |
108 |
Q |
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| T |
43257852 |
tggtgttccgcctgacggtggtgaagaaaacttgtcaacttttacaatagtaaattggcttaaaaagatcagtatttatgaagtcacgtatggagaagat |
43257951 |
T |
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| Q |
109 |
aatgatgttgaaatgaatttggaaggatcgatgaatgttacaacagccgaagaagaaaccaatacaggaactactgctcatgttgatacttcaggtttgc |
208 |
Q |
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| T |
43257952 |
aatgatgttgaaatgaatttggaaggatcgatgaatgttacaacagccgaagaagaaaccaatacaggaactactgctcatgttgatacttcaggtttgc |
43258051 |
T |
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| Q |
209 |
tatcaagaaataggtggagataat |
232 |
Q |
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| T |
43258052 |
tatcaagaaataggtggagataat |
43258075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 9 - 233
Target Start/End: Original strand, 43255803 - 43256027
Alignment:
| Q |
9 |
tggtgttccgcctgacggtggtgaagaaaacttgtcaacttttacaatagtaaattggcttaaaaagatcagtatttatgaagtcgcgtatggagaagat |
108 |
Q |
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||||||||||||||||| | ||||||||||| |||||||||| | ||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
43255803 |
tggtgttccgcctgacgttacagaagaaaacttttcaacttttagcaaagtaaattggcttaaaaagatcaatatttatgaagtcgcatatggagaagat |
43255902 |
T |
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| Q |
109 |
aatgatgttgaaatgaatttggaaggatcgatgaatgttacaacagccgaagaagaaaccaatacaggaactactgctcatgttgatacttcaggtttgc |
208 |
Q |
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| T |
43255903 |
aatgaagttgatatgaatttggatgaattgatgaattctgcaacagtcgatgaagaaattaatgcaggaagtactactaatgtttttacttcaggtttgc |
43256002 |
T |
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| Q |
209 |
tatcaagaaataggtggagataatt |
233 |
Q |
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| T |
43256003 |
aatcaagaaataagtggagataatt |
43256027 |
T |
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