View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9453_low_38 (Length: 249)
Name: NF9453_low_38
Description: NF9453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9453_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 15 - 231
Target Start/End: Complemental strand, 35881660 - 35881447
Alignment:
| Q |
15 |
tttggtgttcactgttgcatgaagattctactatagagaagaaggttaggagaatcaagaatctgtaaaaaggtttcattttgaaatagtgagtgtctca |
114 |
Q |
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| T |
35881660 |
tttggtgtttactgttgcatgaagattctactatagagaagaaggttaggagaatcaagaatctgtaaaaaggtttcattttgaaatac---gtgtctca |
35881564 |
T |
|
| Q |
115 |
gcttattgagctagaactagaaagaaaatatttaaaacaggggttgctctgttttactattgttgttcgtgttgctaaggttcaagattataaacaaaaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
35881563 |
gcttattgagctagaactagaaagaaaatatttaaaacagggattgctctgttttactattgttgttcgtgttgctaaggttaaagattatagacaaaaa |
35881464 |
T |
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| Q |
215 |
acaagggttactcttcc |
231 |
Q |
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||||||||||||||||| |
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| T |
35881463 |
acaagggttactcttcc |
35881447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 15 - 231
Target Start/End: Complemental strand, 24455861 - 24455648
Alignment:
| Q |
15 |
tttggtgttcactgttgcatgaagattctactatagagaagaaggttaggagaatcaagaatctgtaaaaaggtttcattttgaaatagtgagtgtctca |
114 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
24455861 |
tttggtgtttactgttgcatgaagattctactatagagaagaaggttaggagaatcaagaatctgtaaaaaggtttcattttgaaatac---gtgtctca |
24455765 |
T |
|
| Q |
115 |
gcttattgagctagaactagaaagaaaatatttaaaacaggggttgctctgttttactattgttgttcgtgttgctaaggttcaagattataaacaaaaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
24455764 |
gcttattgagctagaactagaaagaaaatatttaaaacagggattgctctgttttactattgttgttcgtgttgctaaggttaaagattatagacaaaaa |
24455665 |
T |
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| Q |
215 |
acaagggttactcttcc |
231 |
Q |
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||||||||||||||||| |
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| T |
24455664 |
acaagggttactcttcc |
24455648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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