View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9453_low_39 (Length: 246)
Name: NF9453_low_39
Description: NF9453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9453_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 26121342 - 26121130
Alignment:
| Q |
19 |
acttttctattttcctaatgacttctttgtttctcaatctattacctcaattcgtctcctcccttttgctggacccaagactcaggtttcattttcatca |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26121342 |
acttttctattttcctaatgacttctttgtttctcaatctattacctcaattcgtctcctcccttttgctggacccaagactcaggtttcattttcatca |
26121243 |
T |
|
| Q |
119 |
aagattatatctttcatttttaaagtttgggtcttctcttaaattttaaggtcatgcatgatttatgttgactcgaaatttaatttatatcttttgactt |
218 |
Q |
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||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
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| T |
26121242 |
aagattatatctttcattttttaaatttgggtcttctcttaaattttaaggtcttgcatgatttatgttgactcgaaa-----tttatatcttttgactt |
26121148 |
T |
|
| Q |
219 |
tactgtttttgttctgtg |
236 |
Q |
| |
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||||||||||||| |||| |
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| T |
26121147 |
tactgtttttgttttgtg |
26121130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 21 - 236
Target Start/End: Complemental strand, 26128767 - 26128561
Alignment:
| Q |
21 |
ttttctattttcctaatgacttctttgtttctcaatctattacctcaattcgtctcctcccttttgctggacccaagactcaggtttcattttcatcaaa |
120 |
Q |
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|||||| |||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
26128767 |
ttttcttttttcctaatgacttctttgcttctcaatccattacctcaattcgtctcttcccttttgctggacccaagacccaggtttctttttcatcaaa |
26128668 |
T |
|
| Q |
121 |
gatta--tatctttcatttttaaagtttgggtcttctcttaaattttaaggtcatgcatgatttatgttgactcgaaatttaatttatatcttttgactt |
218 |
Q |
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| T |
26128667 |
gattatttatctttcgtgtt-----tttctttcat-ttttaaattttaaggtcttgcatgatttttgttgactcca-----aatttatatcttttgactt |
26128579 |
T |
|
| Q |
219 |
tactgtttttgttctgtg |
236 |
Q |
| |
|
||||||||||||| |||| |
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| T |
26128578 |
tactgtttttgttttgtg |
26128561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 21 - 125
Target Start/End: Complemental strand, 26111813 - 26111709
Alignment:
| Q |
21 |
ttttctattttcctaatgacttctttgtttctcaatctattacctcaattcgtctcctcccttttgctggacccaagactcaggtttcattttcatcaaa |
120 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||| ||||||||| |||||||||||||||||||| |
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| T |
26111813 |
ttttcttttttcctaatgacttctttgtttctcaatctattacctcaattcgtcacctacctgttgctgtacccaagacccaggtttcattttcatcaaa |
26111714 |
T |
|
| Q |
121 |
gatta |
125 |
Q |
| |
|
||||| |
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|
| T |
26111713 |
gatta |
26111709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 26085476 - 26085379
Alignment:
| Q |
21 |
ttttctattttcctaatgacttctttgtttctcaatctattacctcaattcgtctcctcccttttgctggacccaagactcaggtttcattttcatca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||| ||||||||| |||||||||||||||||| |
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| T |
26085476 |
ttttctattttcctaatgacttctttgtttctcaatctattacctcaattcgtcacctacctgttgctgtacccaagacccaggtttcattttcatca |
26085379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 21 - 125
Target Start/End: Complemental strand, 26056239 - 26056135
Alignment:
| Q |
21 |
ttttctattttcctaatgacttctttgtttctcaatctattacctcaattcgtctcctcccttttgctggacccaagactcaggtttcattttcatcaaa |
120 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||| ||||||||||||| ||||| ||| ||| |||||| ||||||||| |||||||||||||||||||| |
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| T |
26056239 |
ttttcttttttcctaaagacttctttgtttctcagtctattacctcaaatcgtcacctacctgttgctgtacccaagacccaggtttcattttcatcaaa |
26056140 |
T |
|
| Q |
121 |
gatta |
125 |
Q |
| |
|
||||| |
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|
| T |
26056139 |
gatta |
26056135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 21 - 125
Target Start/End: Complemental strand, 26067901 - 26067797
Alignment:
| Q |
21 |
ttttctattttcctaatgacttctttgtttctcaatctattacctcaattcgtctcctcccttttgctggacccaagactcaggtttcattttcatcaaa |
120 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||| ||||||||||||| ||||| ||| ||| |||||| ||||||||| |||||||||||||||||||| |
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| T |
26067901 |
ttttcttttttcctaaagacttctttgtttctcagtctattacctcaaatcgtcacctacctgttgctgtacccaagacccaggtttcattttcatcaaa |
26067802 |
T |
|
| Q |
121 |
gatta |
125 |
Q |
| |
|
||||| |
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|
| T |
26067801 |
gatta |
26067797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 22 - 192
Target Start/End: Complemental strand, 26038333 - 26038150
Alignment:
| Q |
22 |
tttctattttcctaatgacttctttgtttctcaatctattacctcaattcgtctcctcccttttgctggacccaagactcaggtttcattttcatcaaag |
121 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||||| |||| ||||| | || || ||| |||| |||| || ||||||| ||||||||||||| |
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| T |
26038333 |
tttcttttttcctaatggcttctttgtttctcaatctattacatcaaatcgtcgcatcgctgttgttggatccaaaacccaggttttattttcatcaaag |
26038234 |
T |
|
| Q |
122 |
attata-------------tctttcatttttaaagtttgggtcttctcttaaattttaaggtcatgcatgatttatgttgactc |
192 |
Q |
| |
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||| || |||||||||||| || |||||||||| |||| ||||||||| || |||||||||| |||||||| |
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| T |
26038233 |
attgtagcttttgtgtttttctttcatttttgaattttgggtcttgtcttgaattttaagctcttgcatgattttcgttgactc |
26038150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 26056612 - 26056653
Alignment:
| Q |
28 |
ttttcctaatgacttctttgtttctcaatctattacctcaat |
69 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||| |
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| T |
26056612 |
ttttcctaatgacatctttgtttctcaatctattacctcaat |
26056653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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