View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9453_low_44 (Length: 237)

Name: NF9453_low_44
Description: NF9453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9453_low_44
NF9453_low_44
[»] chr7 (3 HSPs)
chr7 (17-219)||(5938518-5938720)
chr7 (17-80)||(7133228-7133291)
chr7 (17-60)||(23930265-23930308)
[»] chr8 (3 HSPs)
chr8 (24-72)||(14513132-14513180)
chr8 (24-80)||(14659651-14659707)
chr8 (18-94)||(29510235-29510310)
[»] chr4 (6 HSPs)
chr4 (17-94)||(24343553-24343630)
chr4 (24-81)||(31243491-31243548)
chr4 (24-79)||(10133756-10133811)
chr4 (18-60)||(7012119-7012161)
chr4 (24-66)||(20743236-20743278)
chr4 (17-94)||(944604-944681)
[»] chr5 (2 HSPs)
chr5 (24-72)||(2419914-2419962)
chr5 (17-57)||(43554567-43554607)
[»] chr3 (1 HSPs)
chr3 (21-81)||(25074839-25074899)
[»] chr2 (1 HSPs)
chr2 (18-94)||(37419796-37419871)
[»] chr1 (3 HSPs)
chr1 (30-94)||(20157286-20157350)
chr1 (17-65)||(32899931-32899979)
chr1 (17-57)||(42004920-42004960)


Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 5938518 - 5938720
Alignment:
Q  17 aggtgttgtgtcggtgtcagacaccgatgcgtgtccgacaccggaacacacgtaatatgaggagtttctatgcttcattcaaattcataaaaatcaaata 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||| ||||||||||||||||||||||||    
T  5938518 aggtgttgtgtcggtgtcagacaccgatgcgtgtccgacaccggaacacacctaatctgaggagtttctctgctttattcaaattcataaaaatcaaata 5938617  T
Q  117 aaagaatcaaaagtctgtttatttttaaacaaccctttcagtttttactgtgtatgtgagtggctgaaaacaggaaacactagaagcaaacaaatactaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5938618 aaagaatcaaaagtctgtttatttttaaacaaccctttcagtttttactgtgtatgtgagtggctgaaaacaggaaacactagaagcaaacaaatactaa 5938717  T
Q  217 aat 219  Q
    |||    
T  5938718 aat 5938720  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 7133291 - 7133228
Alignment:
Q  17 aggtgttgtgtcggtgtcagacaccgatgcgtgtccgacaccggaacacacgtaatatgaggag 80  Q
    ||||| |||||||||||| |||||||| ||||||||||||| || |||||| |||| |||||||    
T  7133291 aggtggtgtgtcggtgtcggacaccgacgcgtgtccgacactgggacacacctaatctgaggag 7133228  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 23930265 - 23930308
Alignment:
Q  17 aggtgttgtgtcggtgtcagacaccgatgcgtgtccgacaccgg 60  Q
    |||||||||||||||||| || ||||||||||||||||||||||    
T  23930265 aggtgttgtgtcggtgtcggataccgatgcgtgtccgacaccgg 23930308  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 14513180 - 14513132
Alignment:
Q  24 gtgtcggtgtcagacaccgatgcgtgtccgacaccggaacacacgtaat 72  Q
    |||||||||||||||||||| || |||||||||||||||||||| ||||    
T  14513180 gtgtcggtgtcagacaccgacgcatgtccgacaccggaacacacctaat 14513132  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 14659707 - 14659651
Alignment:
Q  24 gtgtcggtgtcagacaccgatgcgtgtccgacaccggaacacacgtaatatgaggag 80  Q
    |||||||||||||||||| | |||||||| ||||||  |||||| |||| |||||||    
T  14659707 gtgtcggtgtcagacaccaacgcgtgtccaacaccgagacacacctaatctgaggag 14659651  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 29510310 - 29510235
Alignment:
Q  18 ggtgttgtgtcggtgtcagacaccgatgcgtgtccgacaccggaacacacgtaatatgaggagtttctatgcttcat 94  Q
    ||||| ||||||||||| ||||| || |||||||||||||||| |||||| ||||  ||||||| ||  ||||||||    
T  29510310 ggtgtagtgtcggtgtcggacac-gacgcgtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcat 29510235  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 24343553 - 24343630
Alignment:
Q  17 aggtgttgtgtcggtgtcagacaccgatgcgtgtccgacaccggaacacacgtaatatgaggagtttctatgcttcat 94  Q
    |||||| ||||||||||| |||||||| |||||||||||||||| |||| | || | |||||||| ||  ||||||||    
T  24343553 aggtgtcgtgtcggtgtccgacaccgacgcgtgtccgacaccgggacacgcctattctgaggagtgtccgtgcttcat 24343630  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 31243548 - 31243491
Alignment:
Q  24 gtgtcggtgtcagacaccgatgcgtgtccgacaccggaacacacgtaatatgaggagt 81  Q
    |||| |||||| ||||||||||||||| ||||||| | |||||| |||||||||||||    
T  31243548 gtgttggtgtcggacaccgatgcgtgttcgacaccaggacacacctaatatgaggagt 31243491  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 10133756 - 10133811
Alignment:
Q  24 gtgtcggtgtcagacaccgatgcgtgtccgacaccggaacacacgtaatatgagga 79  Q
    ||||||||||||||||| || |||||||||||||| | |||||| |||| ||||||    
T  10133756 gtgtcggtgtcagacactgacgcgtgtccgacaccaggacacacctaatctgagga 10133811  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 7012119 - 7012161
Alignment:
Q  18 ggtgttgtgtcggtgtcagacaccgatgcgtgtccgacaccgg 60  Q
    ||||||||||||||||| |||||||| |||| |||||||||||    
T  7012119 ggtgttgtgtcggtgtcggacaccgacgcgtatccgacaccgg 7012161  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 66
Target Start/End: Complemental strand, 20743278 - 20743236
Alignment:
Q  24 gtgtcggtgtcagacaccgatgcgtgtccgacaccggaacaca 66  Q
    |||||| |||||||||||||  |||||||||||||||||||||    
T  20743278 gtgtcgatgtcagacaccgacacgtgtccgacaccggaacaca 20743236  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 944681 - 944604
Alignment:
Q  17 aggtgttgtgtcggtgtcagacaccgatgcgtgtccgacaccggaacacacgtaatatgaggagtttctatgcttcat 94  Q
    |||||| ||||| |||||  |||| || |||||||||||||||| |||||| |||| |||||||| |||  |||||||    
T  944681 aggtgtcgtgtcagtgtcgaacacagacgcgtgtccgacaccgggacacacctaatctgaggagtctctgagcttcat 944604  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 2419914 - 2419962
Alignment:
Q  24 gtgtcggtgtcagacaccgatgcgtgtccgacaccggaacacacgtaat 72  Q
    |||| ||||||||||||||||||||||||||| |||| |||||| ||||    
T  2419914 gtgttggtgtcagacaccgatgcgtgtccgaccccgggacacacctaat 2419962  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 43554567 - 43554607
Alignment:
Q  17 aggtgttgtgtcggtgtcagacaccgatgcgtgtccgacac 57  Q
    |||||| ||||||||||| |||||||| |||||||||||||    
T  43554567 aggtgtcgtgtcggtgtcggacaccgacgcgtgtccgacac 43554607  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 25074839 - 25074899
Alignment:
Q  21 gttgtgtcggtgtcagacaccgatgcgtgtccgacaccggaacacacgtaatatgaggagt 81  Q
    |||||||||||||| |||||| | ||||||||||||| || |||||| ||||  |||||||    
T  25074839 gttgtgtcggtgtctgacaccaacgcgtgtccgacactgggacacacctaatccgaggagt 25074899  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 37419796 - 37419871
Alignment:
Q  18 ggtgttgtgtcggtgtcagacaccgatgcgtgtccgacaccggaacacacgtaatatgaggagtttctatgcttcat 94  Q
    ||||| ||||||||||| ||||| ||||||||||||||||||| |||| | ||||  ||||||| ||  ||||||||    
T  37419796 ggtgtcgtgtcggtgtcggacac-gatgcgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcat 37419871  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 20157350 - 20157286
Alignment:
Q  30 gtgtcagacaccgatgcgtgtccgacaccggaacacacgtaatatgaggagtttctatgcttcat 94  Q
    ||||| |||||||| |||||||||||||||  |||||| |||| |||||||| ||  ||||||||    
T  20157350 gtgtccgacaccgacgcgtgtccgacaccgagacacacctaatttgaggagtatccgtgcttcat 20157286  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 32899931 - 32899979
Alignment:
Q  17 aggtgttgtgtcggtgtcagacaccgatgcgtgtccgacaccggaacac 65  Q
    |||||||||||||||||| |||||||| || |||| |||||||| ||||    
T  32899931 aggtgttgtgtcggtgtcggacaccgacgcatgtcggacaccgggacac 32899979  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 42004960 - 42004920
Alignment:
Q  17 aggtgttgtgtcggtgtcagacaccgatgcgtgtccgacac 57  Q
    |||||||||||||||||| |||||||| || ||||||||||    
T  42004960 aggtgttgtgtcggtgtcggacaccgacgcatgtccgacac 42004920  T

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