View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9453_low_45 (Length: 232)
Name: NF9453_low_45
Description: NF9453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9453_low_45 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 38521169 - 38520951
Alignment:
| Q |
1 |
ggaagaataaagagggtaagtgtaaaaatcttgtggtggaaactaaagtccgtaaaataaaagttaggataaaaagctctaaggtttggtctaggtgtaa |
100 |
Q |
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| T |
38521169 |
ggaagaataaagagggtaagtgtaaaaatcttgtgatggaaactaaagtccgtaaaataaaagttaggataaaaagctctaaggtttggtctaggtgtaa |
38521070 |
T |
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| Q |
101 |
aaatgttgaaactttgaa-aaaatataaggaagctaagaaggagaccaagaagaccgtggacaaagtaaagaccaaagcttttgacgtgttatatcaatc |
199 |
Q |
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| T |
38521069 |
aaatgttgaaactttgaaaaaaatataaggaagctaagaaggagaccaagaagaccgtggacgaagtaaagaccaaagcttttgacgcgttatatcaatc |
38520970 |
T |
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| Q |
200 |
cttaggaaacaaaggaggg |
218 |
Q |
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| T |
38520969 |
cttaggaaacaaaggaggg |
38520951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 151
Target Start/End: Original strand, 27916087 - 27916152
Alignment:
| Q |
86 |
ttggtctaggtgtaaaaatgttgaaactttgaaaaaatataaggaagctaagaaggagaccaagaa |
151 |
Q |
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| T |
27916087 |
ttggtctttgtgtaaaaatgtcgaaacttgggataaatataagatagctaagaatgagaccaagaa |
27916152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 169
Target Start/End: Complemental strand, 227093 - 227041
Alignment:
| Q |
117 |
aaaaaatataaggaagctaagaaggagaccaagaagaccgtggacaaagtaaa |
169 |
Q |
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||||||||||||||||||||||| |||| |||||| | |||||| ||||||| |
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| T |
227093 |
aaaaaatataaggaagctaagaaagagatgaagaagccggtggacgaagtaaa |
227041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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