View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9453_low_46 (Length: 212)
Name: NF9453_low_46
Description: NF9453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9453_low_46 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 1e-95; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 16 - 192
Target Start/End: Original strand, 30271044 - 30271220
Alignment:
| Q |
16 |
ataggtttgatagtacacaaggttgagactcaactccttcctcaccattccatataggtgttttgtcatctttaagcattgagcttttggctatgctcca |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30271044 |
ataggtttgatagtacacaaggttgagactcaactccttcctcaccattccatataggtgttttgtcatctttaagcattgagcttttggctatgctcca |
30271143 |
T |
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| Q |
116 |
tccaaaatcagagaaggaattgaaaaaggagaatatggttgaaggaaaccacttgaaaaaacctttcttgggagata |
192 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30271144 |
tccaaaatcagagaaggaattgaaaaaggagaatatggttgaaggaaaccacttgaaaaaacctttcttgggagata |
30271220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 16 - 192
Target Start/End: Complemental strand, 30281145 - 30280969
Alignment:
| Q |
16 |
ataggtttgatagtacacaaggttgagactcaactccttcctcaccattccatataggtgttttgtcatctttaagcattgagcttttggctatgctcca |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30281145 |
ataggtttgatagtacacaaggttgagactcaactccttcctcaccattccatataggtgttttgtcatctttaagcattgagcttttggctatgctcca |
30281046 |
T |
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| Q |
116 |
tccaaaatcagagaaggaattgaaaaaggagaatatggttgaaggaaaccacttgaaaaaacctttcttgggagata |
192 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30281045 |
tccaaaatcagagaaggaattgaaaaaggagaatatggttgaaggaaaccacttgaaaaaacctttcttgggagata |
30280969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 16 - 192
Target Start/End: Original strand, 30304111 - 30304287
Alignment:
| Q |
16 |
ataggtttgatagtacacaaggttgagactcaactccttcctcaccattccatataggtgttttgtcatctttaagcattgagcttttggctatgctcca |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30304111 |
ataggtttgatagtacacaaggttgagactcaactccttcctcaccattccatataggtgttttgtcatctttaagcattgagcttttggctatgctcca |
30304210 |
T |
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| Q |
116 |
tccaaaatcagagaaggaattgaaaaaggagaatatggttgaaggaaaccacttgaaaaaacctttcttgggagata |
192 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
30304211 |
tccaaaatcagagaaggaattgaaaaaggggaatatggttgaagggaaccacttgaaaaagcctttcttgggagata |
30304287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 16 - 189
Target Start/End: Original strand, 30264150 - 30264323
Alignment:
| Q |
16 |
ataggtttgatagtacacaaggttgagactcaactccttcctcaccattccatataggtgttttgtcatctttaagcattgagcttttggctatgctcca |
115 |
Q |
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|
|||||||||||||| ||||||| || |||| ||||||||||||||||||||||||| ||| ||||||| || ||||| ||||| ||| ||||| |
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| T |
30264150 |
ataggtttgatagtgcacaaggcagaaactctgaaccttcctcaccattccatataggtgatttatcatcttcaattattgaacttttcaatatactcca |
30264249 |
T |
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| Q |
116 |
tccaaaatcagagaaggaattgaaaaaggagaatatggttgaaggaaaccacttgaaaaaacctttcttgggag |
189 |
Q |
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|||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||| ||| ||||||||| |
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| T |
30264250 |
tccaaaatcagagattgaattgaaaagggagaatatggttgaagggaaccacttgaaaaagcctctcttgggag |
30264323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 16 - 189
Target Start/End: Complemental strand, 30288038 - 30287865
Alignment:
| Q |
16 |
ataggtttgatagtacacaaggttgagactcaactccttcctcaccattccatataggtgttttgtcatctttaagcattgagcttttggctatgctcca |
115 |
Q |
| |
|
|||||||||||||| ||||||| || |||| ||||||||||||||||||||||||| ||| ||||||| || ||||| ||||| ||| ||||| |
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| T |
30288038 |
ataggtttgatagtgcacaaggcagaaactctgaaccttcctcaccattccatataggtgatttatcatcttcaattattgaacttttcaatatactcca |
30287939 |
T |
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| Q |
116 |
tccaaaatcagagaaggaattgaaaaaggagaatatggttgaaggaaaccacttgaaaaaacctttcttgggag |
189 |
Q |
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|||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||| ||| ||||||||| |
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| T |
30287938 |
tccaaaatcagagattgaattgaaaagggagaatatggttgaagggaaccacttgaaaaagcctctcttgggag |
30287865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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